Detailed information of component protein


Summary

Component ID T6CP000446
Component protein type TssC
T6SS ID (Type) T6SS00051 insolico (Type i4b)
Strain Photorhabdus luminescens subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (494 a.a.); Nucleotide sequence (1482 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS11480
Coordinate (Strand) 2701463..2702944 (-)
NCBI ID WP_011146548.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.5e-127 67..365
VipB_2 PF18945.2 9.2e-45 377..487
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-493 MEQSVVEQQELKTTETSGDFLDQIIDNTQAIRREADRDRVKSQLDQFLAEVTSGSLVVSGDLVNSIDERIAAIDALMSAQLSLVLHHPEFQRLESSWVGLKGLLDQSETDNTQIRMLNATKTDLIKDFKSASDFDQSMLFKNVYEYEYGTFGGEPYSAFVGDFDFDNSPEDLYLLEQISHVAAAAHAPFISSVNAGMLGLNDFGELPRPRDLSKLLATSDYLRWKRFRESDDSRYVGLTLPRVIGRLPYGAKTIPVEQFCFEEQVKEGDSGSYLWINAAYALAGRMVAAFEQYGWCAAIRGVEGGGLVEALPAYHYTSVSGENVLQCPTEVAISDRREKELAELGFIPLVYYKGTDYAAFFSVQSPNKPRKYNSDLANANAKLSTQLQYIMTTSRFAHYLKMIVRDKVGSFMSRGECQSYLQNWINQYIVGSDTVGAEIKASHPLREARVDVVEVPGSPGTYRAVAYLRPHFQLEGLSMSLRLVADLPPSSAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9551 - -


  Protein sequence: 494 a.a.    

>T6CP000446 NC_005126:c2702944-2701463 [Photorhabdus laumondii subsp. laumondii TTO1] [TssC]
MEQSVVEQQELKTTETSGDFLDQIIDNTQAIRREADRDRVKSQLDQFLAEVTSGSLVVSGDLVNSIDERIAAIDALMSAQ
LSLVLHHPEFQRLESSWVGLKGLLDQSETDNTQIRMLNATKTDLIKDFKSASDFDQSMLFKNVYEYEYGTFGGEPYSAFV
GDFDFDNSPEDLYLLEQISHVAAAAHAPFISSVNAGMLGLNDFGELPRPRDLSKLLATSDYLRWKRFRESDDSRYVGLTL
PRVIGRLPYGAKTIPVEQFCFEEQVKEGDSGSYLWINAAYALAGRMVAAFEQYGWCAAIRGVEGGGLVEALPAYHYTSVS
GENVLQCPTEVAISDRREKELAELGFIPLVYYKGTDYAAFFSVQSPNKPRKYNSDLANANAKLSTQLQYIMTTSRFAHYL
KMIVRDKVGSFMSRGECQSYLQNWINQYIVGSDTVGAEIKASHPLREARVDVVEVPGSPGTYRAVAYLRPHFQLEGLSMS
LRLVADLPPSSAA*

  Nucleotide sequence: 1482 bp    

>T6CP000446 NC_005126:c2702944-2701463 [Photorhabdus laumondii subsp. laumondii TTO1] [TssC]
ATGGAACAGAGCGTTGTTGAACAACAAGAATTGAAAACGACGGAAACAAGTGGTGATTTTCTTGATCAAATTATTGATAA
CACCCAAGCCATTCGTCGAGAAGCCGATCGTGATCGGGTAAAAAGCCAGCTCGACCAGTTTCTGGCCGAAGTCACCTCCG
GTTCACTGGTGGTTTCCGGCGATTTGGTAAACAGCATTGACGAACGTATCGCCGCGATTGATGCGCTGATGTCCGCTCAA
CTGAGTCTGGTATTACATCACCCGGAATTTCAGCGTCTGGAATCTTCTTGGGTAGGGCTTAAAGGATTACTTGACCAAAG
CGAAACGGATAATACCCAAATCCGCATGTTGAACGCGACGAAAACCGATTTGATTAAAGATTTTAAATCGGCATCGGATT
TCGATCAGTCAATGCTGTTTAAAAATGTGTATGAATATGAATACGGTACCTTTGGTGGTGAACCTTATTCCGCATTTGTC
GGTGATTTTGACTTTGATAACAGCCCGGAAGATCTCTACTTACTGGAGCAGATTTCTCATGTGGCCGCAGCCGCCCATGC
GCCGTTTATCAGTTCAGTCAACGCGGGCATGTTGGGGCTGAATGATTTTGGTGAACTACCACGTCCACGTGATTTATCCA
AACTGCTTGCAACATCCGATTATCTGCGTTGGAAACGCTTCCGGGAATCTGATGACTCTCGTTATGTCGGCTTGACGTTA
CCACGAGTAATTGGCCGTTTGCCTTATGGGGCAAAAACCATCCCGGTTGAACAATTCTGCTTCGAAGAGCAGGTAAAAGA
AGGGGATAGCGGTAGTTATCTGTGGATTAACGCCGCCTATGCACTGGCAGGCCGTATGGTGGCTGCATTTGAACAGTATG
GTTGGTGTGCTGCGATCCGTGGTGTAGAAGGCGGAGGATTGGTCGAAGCATTGCCAGCGTATCACTATACCTCTGTGTCC
GGTGAAAATGTGCTGCAATGCCCGACTGAGGTGGCTATCTCTGATCGCCGCGAAAAAGAGTTAGCAGAATTAGGGTTCAT
TCCTCTGGTTTATTATAAAGGAACTGACTATGCCGCATTTTTTTCGGTACAGTCACCAAATAAGCCGAGAAAATATAATT
CTGACCTGGCAAATGCCAACGCAAAATTATCAACCCAATTGCAATATATTATGACAACATCTCGTTTCGCCCATTATTTG
AAAATGATTGTGCGTGACAAAGTGGGCAGTTTTATGTCCCGCGGAGAATGTCAATCTTATCTGCAAAACTGGATCAACCA
ATATATTGTTGGCTCTGATACCGTTGGTGCGGAAATAAAAGCGAGTCACCCATTACGGGAGGCAAGAGTTGATGTTGTTG
AAGTTCCTGGATCACCGGGAACATATCGGGCTGTAGCCTATTTAAGGCCGCATTTCCAATTAGAAGGATTAAGTATGTCT
TTACGGTTGGTTGCTGATTTACCGCCATCATCGGCTGCCTGA