SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000442
Component protein type	TssG
T6SS ID (Type)	T6SS00051 (Type i4b)
Strain	Photorhabdus luminescens subsp. laumondii TTO1
Replicon	chromosome
Sequence	Protein sequence (337 a.a.); Nucleotide sequence (1011 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	PLU_RS11460
Coordinate (Strand)	2697600..2698610 (-)
NCBI ID	WP_011146544.1
RefSeq	NC_005126
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	3e-75	13..315

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-336	MAIENKMRLVGGRFYQNVRRLLKRCRQREETAIIPDDVVQFSSVLTLDAPEREVESLLPPQEGDEQYRMAVHHFGLLGTLGALPLRYTEWLIDRRYRYGDESAQAFIDIFTHRLLSLRFQAWQKYRLYINTELQNHAELQNHAELQNHAEWQNYRALPAVIPAVAGQLMADTTQRSHPACVGLLATPVRSMVNLQQLLQRELGMAVSIQPFKGRWQYAEQAHCCCLGRSLLGDNPMLGRAYWDIQSGFHIQLGPFAARQRAAFMPGNEQYRKLTQWVWQFAGPLLSFSLELLVQHSGQGNILNGSRQLGWDGCLGDTGESNIQRLYLAECTGPYAN

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9961	-	-

Protein sequence: 337 a.a.

						>T6CP000442 NC_005126:c2698610-2697600 [Photorhabdus laumondii subsp. laumondii TTO1] [TssG]
MAIENKMRLVGGRFYQNVRRLLKRCRQREETAIIPDDVVQFSSVLTLDAPEREVESLLPPQEGDEQYRMAVHHFGLLGTL
GALPLRYTEWLIDRRYRYGDESAQAFIDIFTHRLLSLRFQAWQKYRLYINTELQNHAELQNHAELQNHAEWQNYRALPAV
IPAVAGQLMADTTQRSHPACVGLLATPVRSMVNLQQLLQRELGMAVSIQPFKGRWQYAEQAHCCCLGRSLLGDNPMLGRA
YWDIQSGFHIQLGPFAARQRAAFMPGNEQYRKLTQWVWQFAGPLLSFSLELLVQHSGQGNILNGSRQLGWDGCLGDTGES
NIQRLYLAECTGPYAN*					

Nucleotide sequence: 1011 bp

						>T6CP000442 NC_005126:c2698610-2697600 [Photorhabdus laumondii subsp. laumondii TTO1] [TssG]
ATGGCTATAGAAAATAAAATGCGTTTAGTTGGCGGCCGTTTTTATCAAAATGTACGTCGTCTGCTTAAACGTTGTCGCCA
GCGTGAAGAAACGGCAATCATCCCTGATGATGTGGTGCAATTCAGTTCGGTACTGACATTAGATGCGCCGGAAAGGGAAG
TCGAGTCGCTATTACCACCGCAAGAGGGGGATGAACAGTATCGCATGGCGGTACATCACTTTGGTCTATTAGGCACCCTT
GGCGCATTACCATTGCGTTATACCGAATGGTTGATTGACAGGCGTTACCGCTATGGTGACGAATCAGCTCAGGCGTTTAT
TGATATTTTTACTCATCGTCTGCTTAGCCTGCGTTTTCAGGCATGGCAGAAATACCGGTTATATATTAATACCGAGTTAC
AAAACCATGCCGAGTTACAAAACCATGCCGAGCTACAAAACCATGCGGAATGGCAAAATTATCGGGCTTTACCGGCAGTC
ATTCCAGCAGTTGCCGGCCAATTGATGGCGGACACCACACAGCGTTCTCATCCCGCCTGTGTCGGGTTGCTGGCAACACC
GGTCCGCTCAATGGTGAATTTGCAGCAGCTATTGCAGCGGGAATTGGGTATGGCAGTCAGCATCCAGCCCTTTAAAGGGC
GCTGGCAATATGCTGAACAGGCACACTGTTGCTGTTTAGGTCGCAGTTTGTTAGGCGATAACCCGATGTTGGGTCGCGCT
TATTGGGATATTCAATCAGGATTTCATATTCAGTTGGGGCCGTTTGCCGCTCGGCAACGAGCCGCCTTTATGCCGGGAAA
TGAACAATATCGCAAACTGACACAATGGGTGTGGCAATTTGCCGGACCGCTGCTCTCCTTTTCACTGGAATTGTTGGTAC
AGCATAGCGGGCAAGGCAATATATTAAATGGCAGCCGCCAATTGGGGTGGGATGGTTGTTTGGGCGATACCGGCGAAAGC
AATATTCAGCGTCTCTATTTGGCTGAATGTACAGGTCCCTACGCAAATTAA					