Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00019  |
| T6SS type | Type i2 |
| Strain | Yersinia pestis CO92 |
| Replicon (RefSeq) | chromosome (NC_003143) |
| Location | 1651381..1695174 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| YPO_RS08255 | 1647116..1647334 | + | 219 | WP_002213036.1 | hypothetical protein | ||
| YPO_RS08260 | 1647598..1648122 | + | 525 | WP_002213034.1 | beta-hydroxyacyl-ACP dehydratase | ||
| YPO_RS08265 | 1648112..1649395 | + | 1284 | WP_002213032.1 | beta-ketoacyl-[acyl-carrier-protein] synthase family protein | ||
| YPO_RS08270 | 1649397..1650134 | + | 738 | WP_002213030.1 | SDR family oxidoreductase | ||
| YPO_RS08275 | 1650150..1651388 | + | 1239 | WP_002213028.1 | hydroxymethylglutaryl-CoA synthase family protein | ||
| YPO_RS08280 | 1651381..1652100 | + | 720 | WP_002213026.1 | enoyl-CoA hydratase/isomerase family protein | ||
| YPO_RS08285 | 1652102..1652854 | + | 753 | WP_002213025.1 | enoyl-CoA hydratase/isomerase family protein | ||
| YPO_RS08290 | 1652857..1653645 | + | 789 | WP_002213024.1 | SDR family oxidoreductase | ||
| YPO_RS08295 | 1653732..1654172 | + | 441 | WP_002228570.1 | lipocalin-like domain-containing protein | ||
| YPO_RS08300 | 1654210..1654458 | + | 249 | WP_002213017.1 | acyl carrier protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||