SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000151
Component protein type	TssE
T6SS ID (Type)	T6SS00019 (Type i2)
Strain	Yersinia pestis CO92
Replicon	chromosome
Sequence	Protein sequence (151 a.a.); Nucleotide sequence (453 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	YPO_RS08420
Coordinate (Strand)	1688084..1688536 (+)
NCBI ID	WP_002211943.1
RefSeq	NC_003143
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
GPW_gp25	PF04965.16	7.3e-09	35..116

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-150	MPDTSSPSLYEQLLGNFTGGLDLHQVSDENQVILSVLDNMQRILNCRAGTLSHLPDYGLPDMSKILQGLPGSAHSLLTTLSATLLKYEPRLKSLQVILLPQTTPGHLEYAIDAELKGLGLVRYGTAFMPEGRVLMRHLKQQHYLNQRESF

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9929	-	-

Protein sequence: 151 a.a.

						>T6CP000151 NC_003143:1688084-1688536 [Yersinia pestis CO92] [TssE]
MPDTSSPSLYEQLLGNFTGGLDLHQVSDENQVILSVLDNMQRILNCRAGTLSHLPDYGLPDMSKILQGLPGSAHSLLTTL
SATLLKYEPRLKSLQVILLPQTTPGHLEYAIDAELKGLGLVRYGTAFMPEGRVLMRHLKQQHYLNQRESF*					

Nucleotide sequence: 453 bp

						>T6CP000151 NC_003143:1688084-1688536 [Yersinia pestis CO92] [TssE]
ATGCCGGATACCTCCTCGCCGTCACTGTATGAGCAATTGCTGGGCAATTTCACCGGCGGGCTTGACCTGCATCAGGTCAG
TGACGAAAACCAGGTCATTCTCTCGGTGCTGGACAATATGCAGCGCATTCTTAATTGTCGGGCCGGAACACTCAGTCATC
TGCCCGATTATGGCCTGCCGGACATGAGTAAAATTCTGCAGGGGTTGCCGGGCAGCGCGCATTCGCTGCTGACCACGCTG
TCCGCCACCTTGCTGAAGTACGAGCCGCGTCTGAAAAGTTTGCAGGTGATTCTGTTGCCACAGACCACACCCGGTCATCT
GGAATACGCCATTGATGCGGAGCTGAAAGGGCTGGGACTGGTGCGCTATGGCACGGCGTTTATGCCGGAGGGCCGGGTGC
TGATGCGCCACCTTAAACAACAACACTACCTCAATCAGCGGGAGTCATTTTGA					