Detailed information of component protein


Summary

Component ID T6CP000146
Component protein type TssI
T6SS ID (Type) T6SS00019 insolico (Type i2)
Strain Yersinia pestis CO92
Replicon chromosome
Sequence Protein sequence (783 a.a.); Nucleotide sequence (2349 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPO_RS08345
Coordinate (Strand) 1665798..1668146 (+)
NCBI ID WP_002211928.1
RefSeq NC_003143
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.1e-59 34..355
DUF2345 PF10106.11 1.7e-50 611..751
T6SS_Vgr PF13296.8 2.9e-34 492..592
Phage_base_V PF04717.14 4.7e-09 406..472
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-782 MNTFLPTIRFDHSHHKLVVRDSTAAVDVLGFEGHESLSQPFCYDIQFTSADKAIGPATMLMHDASLTLAAPMAEAFGVTVQQTQRVIQGVVTGFKRLSASKEECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPRREQVMQYGEDDLTFIRRLLAEVGIWFRFTADPKLNIDVVEFYDDQRFYQQGLTLQAVPPSGMHDSGMESVWDLSSAHQVVEKSVSTGDYNYRTATADLTAGADITRGDTTTYGEAYHYADNYLTAGSEGREPESESGAFYARLRHERYLNNQARFAGVANAAALAPGQELNVTGNDVPAQFGKGVIITRITSHARRDRSYEVHFEAIPYSEDYCFRPALIRKPTMAGTLPARVTSTTANDTYGHIDKDGRYRVNLMFDRDSWESGYESLWVRQARPYAGDSYGLHLPLLAGTEVAIAFEDGNPDRPYIAYVLHDSAHGDHVTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGVLRAEKGLFITADGQAKAQGQVLEMQPAISLLKSAQEQMEAISADAQTATASPADLQVQISLLQQNLTELKQAVLLLSAPKGIALSSGEHLQMSASDNLIATAGKNADVSVAKNFFIGVGNTLSIFVRKLGMKLIANQGPITVQAQNDLMELLARKAITITSTEDEIKITAKKRITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRLDKAKLPTEFPALAAKTEDPIKRWLFS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9897 - -


  Protein sequence: 783 a.a.    

>T6CP000146 NC_003143:1665798-1668146 [Yersinia pestis CO92] [TssI]
MNTFLPTIRFDHSHHKLVVRDSTAAVDVLGFEGHESLSQPFCYDIQFTSADKAIGPATMLMHDASLTLAAPMAEAFGVTV
QQTQRVIQGVVTGFKRLSASKEECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPR
REQVMQYGEDDLTFIRRLLAEVGIWFRFTADPKLNIDVVEFYDDQRFYQQGLTLQAVPPSGMHDSGMESVWDLSSAHQVV
EKSVSTGDYNYRTATADLTAGADITRGDTTTYGEAYHYADNYLTAGSEGREPESESGAFYARLRHERYLNNQARFAGVAN
AAALAPGQELNVTGNDVPAQFGKGVIITRITSHARRDRSYEVHFEAIPYSEDYCFRPALIRKPTMAGTLPARVTSTTAND
TYGHIDKDGRYRVNLMFDRDSWESGYESLWVRQARPYAGDSYGLHLPLLAGTEVAIAFEDGNPDRPYIAYVLHDSAHGDH
VTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGVLRAEKGLFITAD
GQAKAQGQVLEMQPAISLLKSAQEQMEAISADAQTATASPADLQVQISLLQQNLTELKQAVLLLSAPKGIALSSGEHLQM
SASDNLIATAGKNADVSVAKNFFIGVGNTLSIFVRKLGMKLIANQGPITVQAQNDLMELLARKAITITSTEDEIKITAKK
RITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRLDKAKLPTEFPALAAKTEDPIKRWLFS*

  Nucleotide sequence: 2349 bp    

>T6CP000146 NC_003143:1665798-1668146 [Yersinia pestis CO92] [TssI]
ATGAATACCTTTCTCCCGACTATTCGGTTTGACCATAGCCACCACAAACTGGTGGTCCGCGACAGCACCGCCGCCGTTGA
TGTGCTGGGCTTTGAAGGCCATGAAAGCCTGAGCCAGCCGTTCTGTTACGACATCCAATTCACCAGCGCCGACAAGGCGA
TTGGCCCGGCGACCATGCTGATGCACGACGCGTCACTGACATTGGCGGCCCCGATGGCCGAAGCTTTTGGCGTGACGGTT
CAGCAGACCCAGCGGGTGATCCAAGGGGTGGTCACCGGATTTAAACGCCTGTCGGCCTCGAAAGAGGAATGCCGCTACGA
ACTGAGCCTGCAACCGCGCCTGGCCTTGTTATCGCGCAGCCATCAGAACGGGATATATCAGGACATGTCGGTGCCGCAGA
TTGTGGAAAAAATTCTGCGTGAGCGCCATGACATGCGCGGTCAGGATTTTGTCTTCACGCTGGCCCGCGAGTACCCACGC
CGCGAGCAGGTAATGCAATACGGCGAGGATGACCTGACCTTTATCCGCCGCCTGCTGGCCGAGGTGGGGATCTGGTTTCG
TTTTACCGCCGATCCCAAACTCAATATTGATGTGGTGGAGTTTTACGACGACCAGCGCTTCTATCAGCAAGGACTGACGC
TACAGGCGGTGCCGCCTTCGGGGATGCACGACAGCGGGATGGAATCGGTCTGGGACCTGTCCAGCGCCCATCAGGTGGTG
GAAAAATCGGTCAGTACCGGCGATTACAACTACCGCACCGCCACTGCCGACCTGACCGCCGGGGCCGACATCACGCGCGG
CGATACCACCACCTACGGCGAAGCCTATCATTACGCCGATAACTATCTGACCGCAGGCAGCGAAGGGCGCGAGCCGGAAA
GTGAAAGTGGGGCCTTTTATGCCCGTCTGCGCCATGAACGTTACCTCAATAATCAGGCGCGCTTCGCCGGGGTGGCCAAT
GCGGCGGCACTGGCACCGGGTCAGGAACTGAACGTCACCGGCAACGACGTGCCAGCACAGTTTGGTAAAGGGGTGATAAT
CACCCGCATCACCAGCCATGCCCGCCGCGACCGCAGCTATGAAGTACATTTTGAAGCCATTCCTTACTCCGAGGATTATT
GCTTCCGTCCGGCGCTGATCCGCAAGCCGACCATGGCCGGGACCTTGCCGGCGCGGGTGACCAGTACCACTGCGAACGAC
ACTTATGGTCATATCGACAAAGACGGGCGCTACCGTGTCAACCTGATGTTCGACCGTGACAGTTGGGAGTCGGGTTACGA
AAGCTTGTGGGTCCGTCAGGCCCGCCCGTATGCGGGTGACAGCTACGGCCTGCACCTGCCGCTGCTGGCAGGCACCGAAG
TGGCGATCGCGTTTGAAGACGGCAACCCGGACCGGCCGTATATCGCCTATGTGCTACACGACTCGGCGCACGGCGACCAT
GTCACCATCAGCAACTACAAACGCAACGTACTGCGTACTCCGTCGAATAACAAACTGCGCCTGGAGGATGAACGGGGTAA
AGAGCACATCAAGCTCAGCACCGAATATGGCGGCAAAAGCCAACTGAATCTGGGGCATTTGGTTGATAACGAGAAACAGC
CTCGGGGTGAGGGTTTTGAGCTGCGCACCGACAGTTTTGGTGTATTACGGGCAGAAAAAGGCCTCTTTATCACTGCCGAC
GGACAGGCCAAAGCACAGGGGCAGGTGCTGGAGATGCAACCGGCTATCAGCCTGTTGAAAAGTGCGCAGGAACAGATGGA
GGCCATCTCCGCGGATGCACAAACCGCCACCGCCAGTCCGGCCGACCTACAGGTACAAATCAGTCTGTTGCAGCAAAATC
TCACTGAACTGAAACAAGCTGTCCTGTTACTGAGTGCGCCAAAGGGGATCGCGTTGAGTAGCGGGGAGCATCTGCAAATG
AGTGCCAGCGATAACCTGATTGCCACCGCCGGTAAAAATGCCGACGTCAGCGTCGCGAAAAATTTCTTTATCGGCGTAGG
CAATACCCTAAGTATCTTCGTCAGAAAGCTGGGGATGAAACTAATAGCCAATCAGGGGCCGATAACAGTCCAGGCGCAGA
ATGATCTAATGGAGTTATTGGCGCGTAAAGCGATCACCATTACCAGCACCGAGGATGAGATAAAAATCACCGCCAAGAAG
AGGATCACGCTGAATGCGGGAGGCAGTTATATCACGCTGGATGAGAATCGGATCGAGTCAGGAACGGCGGGGGAATATTT
GACCAAAGCAGGGTATTACGGGCGGTTAGATAAGGCCAAACTCCCAACTGAATTTCCAGCCTTAGCCGCTAAAACTGAAG
ACCCCATTAAACGTTGGCTATTCTCTTAA