Detailed information of component protein


Summary

Component ID T6CP008414
Component protein type TssA
T6SS ID (Type) T6SS00019 insolico (Type i2)
Strain Yersinia pestis CO92
Replicon chromosome
Sequence Protein sequence (456 a.a.); Nucleotide sequence (1368 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPO_RS08425
Coordinate (Strand) 1688561..1689928 (+)
NCBI ID WP_002211944.1
RefSeq NC_003143
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 4e-43 304..448
ImpA_N PF06812.14 1.1e-19 10..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-455 MAGNTERLLKTGGDPRALADFTALRGELNKLAHPARPDVDWVRVEQLCLALFRQNGVELQTAVDFTLARTHTVGLAGLCEGLELLAGLVCHQWRGLWPPQTHARVALLAWLSDRLQQVWRTMTLCYGDLAQVYRAERALEQLCTQLQTLELKHLCKLDGVRLMLHNAAQRLESTEAVSGLAKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLMAVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQASAMQLDQLTQLPPLWAQARGDALLSQAQQLWPTNQEVKRLNALWQQQRAAGAAPLVELKHYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQQPLAQAVPLEELLRQYQEQLESGQTPSSALRQQIDSRFSQLLNRYALLVVPPGVQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9945 - -


  Protein sequence: 456 a.a.    

>T6CP008414 NC_003143:1688561-1689928 [Yersinia pestis CO92] [TssA]
MAGNTERLLKTGGDPRALADFTALRGELNKLAHPARPDVDWVRVEQLCLALFRQNGVELQTAVDFTLARTHTVGLAGLCE
GLELLAGLVCHQWRGLWPPQTHARVALLAWLSDRLQQVWRTMTLCYGDLAQVYRAERALEQLCTQLQTLELKHLCKLDGV
RLMLHNAAQRLESTEAVSGLAKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLM
AVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQASAMQLDQLTQLPPLWAQAR
GDALLSQAQQLWPTNQEVKRLNALWQQQRAAGAAPLVELKHYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQ
QPLAQAVPLEELLRQYQEQLESGQTPSSALRQQIDSRFSQLLNRYALLVVPPGVQ*

  Nucleotide sequence: 1368 bp    

>T6CP008414 NC_003143:1688561-1689928 [Yersinia pestis CO92] [TssA]
ATGGCAGGTAATACCGAGCGTCTGCTGAAAACCGGTGGCGATCCGCGCGCACTGGCGGATTTCACCGCACTGCGGGGTGA
ATTAAATAAACTGGCCCACCCGGCCCGCCCGGATGTTGATTGGGTGCGAGTCGAGCAGCTTTGTTTGGCGCTGTTTCGCC
AGAACGGCGTTGAGTTACAGACTGCCGTTGATTTTACCCTGGCACGAACGCACACCGTTGGGTTGGCGGGCTTATGTGAA
GGGCTGGAACTGTTGGCGGGGTTGGTCTGCCATCAATGGCGTGGGTTATGGCCACCGCAAACGCATGCCCGGGTGGCGTT
ACTGGCCTGGTTGAGCGACCGGCTGCAGCAAGTGTGGCGCACCATGACGCTGTGCTACGGTGACCTGGCGCAGGTGTACC
GGGCAGAGCGGGCGCTGGAACAGTTGTGTACGCAGTTGCAAACGCTGGAGCTCAAACATTTGTGCAAGCTGGACGGGGTT
CGTTTGATGCTGCATAACGCGGCGCAGCGGTTGGAAAGTACCGAGGCCGTGTCTGGCCTTGCGAAACCACGGGGTGCCTC
TGAACCGCCCGAGTCGCTGCGATTTGCCTCTGTCCCGGTCAGTGAACCACTGGTGTATATTATCAGCGAACCGGCCCCGC
CACCTGTTCAGGTGGTTTTACCTGCCTCACCTCCGCGCTGGAAGGCGGGCCACGGTTTTGCCGCGGGGTTATCGTTGATG
GCGGTACTGATGGCCGGCAGTTTCGTTATCTGGCAGTCGGTATCATCGGATCCCGTGAGGGAAACATTGCTGGCCACTGC
CAGTCCTTTGCCGATACCGCTGAGTGCTAACTCAATAGCTGAACTGAAAAAACAGGCTTCAGATGTTGAGTGGGCACGTC
TGGCGGAACCGGTGTTGCAAGCCAGTGCGATGCAGTTAGATCAACTAACACAGTTACCGCCGTTATGGGCGCAGGCTCGG
GGGGATGCCTTGCTATCTCAGGCGCAACAACTGTGGCCGACCAATCAAGAGGTCAAACGACTGAATGCGTTGTGGCAGCA
ACAGCGAGCAGCCGGTGCTGCGCCCTTGGTAGAGTTGAAACACTATGCATTGGCGCAAGACCGTTTGCGGCAACTGGCAG
AACGACTGAATAGTCTGGATGAGAAAAAACGCGGATATATGACGGTCTCCGAACTGAAATCTGCCGTCTTTGCTATCCAA
CAGCCGCTGGCACAGGCCGTGCCACTGGAAGAACTGCTGCGGCAATATCAGGAACAATTAGAATCAGGGCAAACTCCATC
CTCAGCACTGCGTCAACAGATTGACAGCCGGTTTAGTCAATTGCTGAACCGCTATGCGTTGCTGGTCGTACCTCCTGGCG
TTCAGTAA