SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000149
Component protein type	TssG
T6SS ID (Type)	T6SS00019 (Type i2)
Strain	Yersinia pestis CO92
Replicon	chromosome
Sequence	Protein sequence (362 a.a.); Nucleotide sequence (1086 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	YPO_RS08410
Coordinate (Strand)	1686443..1687528 (+)
NCBI ID	WP_002211941.1
RefSeq	NC_003143
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	1.1e-73	22..319

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-361	MGRESSVPPSRLITRLKRDIGQINFYRFCQLLEQQPGTLPLGSTNSPADDPVRFRPHPGMGFPVSELKALENDPLHPEAPLTARTTFMGLYGVDSPLPTAYIDDITQQREGHEALEGFLDIFNHRFMTQFYRIWRKYSYPATFESGGTDNTSQSLLGLIGMGIPGSQQHFATPTSRFLALLGVMRQPGRTAEGVQALVRLLAPFTEADVTPHCLRTVRLTSPMAFADEGANWLDGYTVLGDEAIDANSQLLISLRTADRDEAANWLPDGPLYTDFLVLLRVYLGWRYRACIQLTVATRLLPALVLDETPIRLGLTGVLGLDDATLSDDIPEYFTVALGHYRGLAPQQHQEGNRRVNYRLEK

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9853	-	-

Protein sequence: 362 a.a.

						>T6CP000149 NC_003143:1686443-1687528 [Yersinia pestis CO92] [TssG]
MGRESSVPPSRLITRLKRDIGQINFYRFCQLLEQQPGTLPLGSTNSPADDPVRFRPHPGMGFPVSELKALENDPLHPEAP
LTARTTFMGLYGVDSPLPTAYIDDITQQREGHEALEGFLDIFNHRFMTQFYRIWRKYSYPATFESGGTDNTSQSLLGLIG
MGIPGSQQHFATPTSRFLALLGVMRQPGRTAEGVQALVRLLAPFTEADVTPHCLRTVRLTSPMAFADEGANWLDGYTVLG
DEAIDANSQLLISLRTADRDEAANWLPDGPLYTDFLVLLRVYLGWRYRACIQLTVATRLLPALVLDETPIRLGLTGVLGL
DDATLSDDIPEYFTVALGHYRGLAPQQHQEGNRRVNYRLEK*					

Nucleotide sequence: 1086 bp

						>T6CP000149 NC_003143:1686443-1687528 [Yersinia pestis CO92] [TssG]
ATGGGAAGAGAATCATCAGTCCCGCCTTCCCGGCTAATCACCCGGCTTAAGCGCGATATCGGCCAGATCAATTTTTACCG
TTTCTGTCAGTTGCTGGAGCAACAACCGGGAACCTTGCCGCTCGGCAGTACCAACAGCCCGGCGGATGATCCGGTGCGTT
TTCGTCCGCATCCCGGCATGGGTTTTCCGGTCAGTGAACTGAAGGCGCTGGAAAACGACCCGCTGCATCCGGAAGCCCCG
TTGACCGCGCGCACCACCTTTATGGGGTTGTACGGGGTGGATTCGCCTTTGCCGACGGCCTATATCGACGATATCACCCA
GCAGCGCGAAGGGCATGAGGCGCTGGAAGGGTTCCTCGATATTTTCAACCACCGTTTTATGACGCAGTTTTATCGCATCT
GGCGCAAATATTCCTATCCGGCCACTTTTGAGTCGGGCGGCACAGACAATACCTCTCAGAGCCTGTTGGGGCTGATAGGC
ATGGGTATTCCTGGCTCACAGCAGCATTTTGCCACCCCGACATCGCGCTTTCTGGCCTTGCTGGGGGTGATGCGACAACC
GGGGCGCACTGCCGAAGGGGTACAGGCGCTGGTCCGGCTGCTGGCCCCGTTTACCGAGGCGGATGTCACGCCCCATTGCC
TGCGCACGGTGCGCCTGACTTCTCCGATGGCGTTTGCCGATGAAGGGGCCAACTGGCTGGACGGCTACACCGTGCTGGGT
GATGAGGCCATTGATGCCAACAGTCAGTTGCTGATTTCGCTGCGCACGGCAGACCGCGACGAGGCCGCTAACTGGTTACC
GGATGGCCCGCTGTATACCGATTTTCTGGTGCTGTTGCGGGTCTATCTGGGCTGGCGTTACCGGGCCTGTATCCAACTGA
CGGTCGCCACCCGGTTGCTGCCGGCGTTGGTGTTGGATGAGACACCGATAAGGCTGGGATTAACCGGCGTGCTGGGGCTG
GATGACGCGACGCTGTCAGACGATATACCTGAATATTTTACCGTGGCGCTGGGCCACTACCGTGGGCTGGCTCCACAGCA
ACATCAAGAAGGAAACCGACGTGTTAACTACCGTTTGGAAAAATAA					