Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EL078_RS07820 Genome accession   NZ_LR134282
Coordinates   1559140..1559925 (-) Length   261 a.a.
NCBI ID   WP_021143055.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554140..1564925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS07800 (NCTC8140_01581) - 1554560..1555471 (-) 912 WP_126438088.1 DMT family transporter -
  EL078_RS07805 (NCTC8140_01582) gatB 1555645..1557087 (-) 1443 WP_021143052.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  EL078_RS07810 (NCTC8140_01583) gatA 1557087..1558553 (-) 1467 WP_024343597.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  EL078_RS07815 (NCTC8140_01584) gatC 1558553..1558855 (-) 303 WP_004233135.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  EL078_RS09440 - 1558927..1559055 (-) 129 WP_268921753.1 hypothetical protein -
  EL078_RS07820 (NCTC8140_01585) codY 1559140..1559925 (-) 786 WP_021143055.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EL078_RS07825 (NCTC8140_01586) - 1560130..1561344 (-) 1215 WP_021143056.1 pyridoxal phosphate-dependent aminotransferase -
  EL078_RS07830 (NCTC8140_01587) - 1561381..1563123 (-) 1743 WP_126438089.1 glycerophosphodiester phosphodiesterase -
  EL078_RS07835 (NCTC8140_01588) - 1563453..1563905 (+) 453 WP_021143058.1 universal stress protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28891.01 Da        Isoelectric Point: 4.4574

>NTDB_id=999841 EL078_RS07820 WP_021143055.1 1559140..1559925(-) (codY) [Streptococcus equinus strain NCTC8140]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMAAQLADIIDCNSCIINGGGNLLGYAMKYKTNTDRVEEFFQAKQFPEEYV
KAASRVYDTEANLSVDNDLTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFSEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=999841 EL078_RS07820 WP_021143055.1 1559140..1559925(-) (codY) [Streptococcus equinus strain NCTC8140]
ATGCCGAATTTATTAGAAAAAACTAGAAAGATTACGTCAATTTTGCAACGCTCAGTTGATAGCCTTGATACCGAATTACC
ATATAACACAATGGCTGCTCAACTTGCTGACATCATTGACTGTAACTCTTGCATCATCAACGGAGGAGGAAACCTTCTTG
GTTATGCAATGAAGTATAAAACAAATACTGACCGTGTTGAAGAATTCTTTCAAGCGAAACAATTCCCTGAAGAATACGTA
AAAGCGGCTAGTCGTGTTTACGATACTGAAGCTAACTTGTCTGTAGATAATGATTTGACAATCTTCCCAGTTGAATCAAA
AGATATTTACCCTGATGGATTAACAACTATCGCTCCAATCTACGGTGGCGGTATGCGTCTTGGTTCTCTTATCATTTGGC
GTAATGATAAAGAATTTTCAGAAGATGATTTGATCCTTGTCGAAATCGCCTCTACAGTAGTTGGTATCCAATTACTTAAC
CTTCAAACTGAAAACCTTGAAGAAACAATTCGTAAACAAACAGCTGTTAACATGGCGATTAACACACTATCTTACTCAGA
AATGAAAGCAGTATCTGCTATTTTGGGTGAACTTGATGGTACAGAAGGTCGTTTGACTGCATCTGTTATCGCTGACCGTA
TTGGTATTACACGTTCTGTTATCGTTAATGCCCTACGTAAATTGGAATCAGCTGGTATCATCGAAAGCCGTTCATTGGGT
ATGAAAGGTACTTACCTTAAAGTTATCAATGAAGGTATCTTCGACAAACTTAAAGAATACAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.9

100

0.659
  codY Bacillus subtilis subsp. subtilis str. 168

52.227

94.636

0.494

Multiple sequence alignment