Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFU40_RS05430 Genome accession   NZ_CP155932
Coordinates   1288819..1290213 (-) Length   464 a.a.
NCBI ID   WP_221261830.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain CFBP 1712     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1283819..1295213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU40_RS05405 (ABFU40_05405) pilC 1284065..1285321 (-) 1257 WP_011038215.1 type II secretion system F family protein Machinery gene
  ABFU40_RS05410 (ABFU40_05410) pilE 1285648..1286088 (+) 441 WP_011038214.1 pilin Machinery gene
  ABFU40_RS05415 (ABFU40_05415) - 1286201..1286602 (+) 402 WP_194734302.1 pilin -
  ABFU40_RS05420 (ABFU40_05420) pilB 1286667..1288400 (+) 1734 WP_011038212.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU40_RS05430 (ABFU40_05430) pilR 1288819..1290213 (-) 1395 WP_221261830.1 sigma-54 dependent transcriptional regulator Regulator
  ABFU40_RS05435 (ABFU40_05435) - 1290422..1292032 (-) 1611 WP_011038210.1 PAS domain-containing sensor histidine kinase -
  ABFU40_RS05440 (ABFU40_05440) sucC 1292266..1293435 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFU40_RS05445 (ABFU40_05445) sucD 1293460..1294335 (+) 876 WP_057671668.1 succinate--CoA ligase subunit alpha -
  ABFU40_RS05450 (ABFU40_05450) - 1294439..1294849 (+) 411 WP_029217117.1 CopG family ribbon-helix-helix protein -
  ABFU40_RS05455 (ABFU40_05455) - 1294853..1295155 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50283.69 Da        Isoelectric Point: 6.3587

>NTDB_id=999843 ABFU40_RS05430 WP_221261830.1 1288819..1290213(-) (pilR) [Xanthomonas campestris pv. campestris strain CFBP 1712]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPLEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAATPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=999843 ABFU40_RS05430 WP_221261830.1 1288819..1290213(-) (pilR) [Xanthomonas campestris pv. campestris strain CFBP 1712]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCTGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCCGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAACCGGGTCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCAGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACACACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGATCTGTATTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATCCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCACCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.261

99.138

0.627
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment