Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   WMB06_RS02775 Genome accession   NZ_CP151275
Coordinates   567114..568157 (+) Length   347 a.a.
NCBI ID   WP_341677554.1    Uniprot ID   -
Organism   Niveibacterium sp. SC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 562114..573157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMB06_RS02745 (WMB06_02745) - 562529..563485 (-) 957 WP_341677548.1 LysR family transcriptional regulator -
  WMB06_RS02750 (WMB06_02750) - 563681..564349 (+) 669 WP_341677549.1 NAD(P)-binding domain-containing protein -
  WMB06_RS02755 (WMB06_02755) - 564373..564672 (-) 300 WP_341677550.1 DUF167 domain-containing protein -
  WMB06_RS02760 (WMB06_02760) - 564686..565258 (-) 573 WP_341677551.1 YggT family protein -
  WMB06_RS02765 (WMB06_02765) proC 565466..566278 (-) 813 WP_341677552.1 pyrroline-5-carboxylate reductase -
  WMB06_RS02770 (WMB06_02770) - 566329..567030 (-) 702 WP_341677553.1 YggS family pyridoxal phosphate-dependent enzyme -
  WMB06_RS02775 (WMB06_02775) pilT 567114..568157 (+) 1044 WP_341677554.1 type IV pilus twitching motility protein PilT Machinery gene
  WMB06_RS02780 (WMB06_02780) pilU 568189..569322 (+) 1134 WP_341677555.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  WMB06_RS02785 (WMB06_02785) - 569423..570085 (-) 663 WP_341677556.1 hypothetical protein -
  WMB06_RS02790 (WMB06_02790) - 570094..571083 (-) 990 WP_341677557.1 5'/3'-nucleotidase SurE -
  WMB06_RS02795 (WMB06_02795) - 571204..571803 (+) 600 WP_341677558.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38719.46 Da        Isoelectric Point: 6.6924

>NTDB_id=976044 WMB06_RS02775 WP_341677554.1 567114..568157(+) (pilT) [Niveibacterium sp. SC-1]
MDITELLAFAVKNKASDLHLSSGLPPMIRVHGDVRRINLPPMEHKEVHAMVYDIMNDSQRKMYEENWECDFSFHVPNLAR
FRVNAFNQDRGAAAVFRTIPSKVLTLEELECPKIFQEIAHQPRGIVLVTGPTGSGKSTTLAAMVDHVNENEYGHILTIED
PIEFVHESKRCLLNQREVARDTHSFNNALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKEMVRAMLSESLRAVIAQTLLKKKDASGRVAAHEIMIGTPAIRNLIREGKIAQMYSAIQTGQNVGMTTLDQT
LQDLVKRNIVSVAEARLKAANKDNFIG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=976044 WMB06_RS02775 WP_341677554.1 567114..568157(+) (pilT) [Niveibacterium sp. SC-1]
ATGGACATCACCGAACTGCTCGCGTTTGCAGTCAAGAACAAAGCATCCGACCTTCACCTCTCGTCGGGACTGCCGCCGAT
GATCCGGGTGCACGGCGACGTGCGGCGGATCAACCTGCCGCCCATGGAGCACAAGGAAGTGCATGCCATGGTGTACGACA
TCATGAATGACTCCCAGCGCAAGATGTACGAGGAGAACTGGGAGTGCGACTTCTCGTTCCACGTCCCCAACCTCGCGCGC
TTCCGGGTCAACGCGTTCAACCAGGATCGCGGCGCCGCCGCCGTGTTCCGGACGATTCCGTCCAAGGTGCTGACGCTCGA
AGAGCTCGAATGCCCGAAGATCTTCCAGGAGATCGCGCATCAGCCGCGCGGCATCGTGCTGGTGACCGGGCCGACCGGCT
CGGGCAAGTCGACCACGCTGGCGGCGATGGTGGACCACGTCAATGAGAACGAGTACGGCCACATCCTCACCATCGAGGAC
CCGATCGAATTCGTGCACGAATCCAAGCGCTGCCTGCTCAACCAGCGCGAAGTCGCGCGCGACACCCACTCCTTCAACAA
CGCGCTGCGCAGCGCGCTGCGGGAAGACCCGGACGTGATCCTGGTGGGCGAATTGCGTGACCTGGAAACCATCCGTCTCG
CGCTGACCGCCGCCGAGACCGGCCACCTGGTGTTCGGCACGCTGCACACCTCGTCCGCCGCCAAGACCATCGACCGTATC
ATCGACGTCTTCCCGGCCGAGGAAAAAGAGATGGTCCGCGCGATGCTCTCCGAATCGCTGCGCGCGGTCATCGCCCAGAC
CCTGCTGAAGAAGAAGGACGCCTCCGGGCGGGTTGCGGCGCACGAGATCATGATCGGTACGCCGGCCATCCGTAACCTGA
TCCGCGAAGGCAAGATCGCGCAGATGTACTCCGCGATCCAGACCGGTCAGAACGTGGGCATGACGACGCTGGACCAGACC
CTGCAAGACCTGGTCAAGCGCAATATCGTCAGCGTTGCCGAAGCGCGCCTGAAGGCCGCCAACAAGGACAACTTCATCGG
TTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

77.457

99.712

0.772
  pilT Acinetobacter baumannii D1279779

77.457

99.712

0.772
  pilT Acinetobacter baumannii strain A118

77.457

99.712

0.772
  pilT Acinetobacter baylyi ADP1

75.652

99.424

0.752
  pilT Pseudomonas aeruginosa PAK

75.072

99.424

0.746
  pilT Pseudomonas stutzeri DSM 10701

74.783

99.424

0.744
  pilT Legionella pneumophila strain Lp02

73.333

99.424

0.729
  pilT Legionella pneumophila strain ERS1305867

73.333

99.424

0.729
  pilT Neisseria meningitidis 8013

69.855

99.424

0.695
  pilT Neisseria gonorrhoeae MS11

69.565

99.424

0.692
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

68.343

97.406

0.666
  pilT Vibrio cholerae strain A1552

68.343

97.406

0.666
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.725

99.424

0.504
  pilU Vibrio cholerae strain A1552

41.86

99.135

0.415
  pilU Acinetobacter baylyi ADP1

40.87

99.424

0.406
  pilU Pseudomonas stutzeri DSM 10701

40.58

99.424

0.403

Multiple sequence alignment