Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   V8687_RS16205 Genome accession   NZ_CP146610
Coordinates   3717390..3718427 (-) Length   345 a.a.
NCBI ID   WP_338725495.1    Uniprot ID   -
Organism   Shewanella baltica strain TMP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3712390..3723427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8687_RS16170 (V8687_16160) - 3712499..3712816 (+) 318 WP_006082510.1 hypothetical protein -
  V8687_RS16175 (V8687_16165) yciH 3712995..3713324 (+) 330 WP_219253466.1 stress response translation initiation inhibitor YciH -
  V8687_RS16180 (V8687_16170) - 3713391..3713954 (+) 564 WP_006082512.1 YqgE/AlgH family protein -
  V8687_RS16185 (V8687_16175) ruvX 3713984..3714409 (+) 426 WP_006082513.1 Holliday junction resolvase RuvX -
  V8687_RS16190 (V8687_16180) hemH 3714495..3715508 (-) 1014 WP_338725494.1 ferrochelatase -
  V8687_RS16195 (V8687_16185) - 3715541..3716080 (-) 540 WP_037392614.1 glutathione peroxidase -
  V8687_RS16200 (V8687_16190) pilU 3716268..3717380 (-) 1113 WP_006085705.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  V8687_RS16205 (V8687_16195) pilT 3717390..3718427 (-) 1038 WP_338725495.1 type IV pilus twitching motility protein PilT Machinery gene
  V8687_RS16210 (V8687_16200) - 3718463..3719161 (+) 699 WP_338725496.1 YggS family pyridoxal phosphate-dependent enzyme -
  V8687_RS16215 (V8687_16205) proC 3719377..3720195 (+) 819 WP_006082519.1 pyrroline-5-carboxylate reductase -
  V8687_RS16220 (V8687_16210) - 3720244..3720792 (+) 549 WP_006082520.1 YggT family protein -
  V8687_RS16225 (V8687_16215) yggU 3720792..3721091 (+) 300 WP_006082521.1 DUF167 family protein YggU -
  V8687_RS16230 (V8687_16220) - 3721224..3721658 (+) 435 WP_006082522.1 DUF4426 domain-containing protein -
  V8687_RS16235 (V8687_16225) rdgB 3721798..3722415 (+) 618 WP_338725497.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38311.97 Da        Isoelectric Point: 6.9096

>NTDB_id=943361 V8687_RS16205 WP_338725495.1 3717390..3718427(-) (pilT) [Shewanella baltica strain TMP1]
MEITELLAFSVKHKASDLHLSAGISPMIRVDGEVRKINLPALDHQGVHSLVYDIMNDKQRKDYEEHLEIDFSFEVPNLAR
FRVNAFNQSRGAAAVFRTIPSEILSLEQLGAPEIFKKIASFPRGLVLVTGPTGSGKSTTLAAMVDYVNENRHDHILTIED
PIEFVHQNKQCLINQREVHRHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAGEKDMVRTMLSESLQAVISQTLIKKVGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMAHGMQTLEQCL
QNLVNRGLITREDAMAKSSNKQATF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=943361 V8687_RS16205 WP_338725495.1 3717390..3718427(-) (pilT) [Shewanella baltica strain TMP1]
ATGGAAATCACTGAGTTATTGGCATTTAGTGTAAAACACAAAGCCTCGGATCTGCACCTTTCTGCAGGGATATCTCCCAT
GATCCGTGTCGACGGTGAAGTGAGAAAAATTAACCTGCCCGCGCTCGATCACCAAGGCGTACACAGCCTAGTGTACGACA
TAATGAATGATAAGCAGCGCAAGGACTACGAAGAACATTTAGAAATCGATTTCTCGTTCGAAGTCCCTAATCTTGCACGC
TTTCGTGTTAACGCATTCAATCAATCCCGTGGTGCTGCGGCCGTATTTCGTACCATTCCTAGCGAAATCTTGTCACTTGA
GCAATTAGGTGCGCCGGAGATTTTTAAAAAAATCGCCAGTTTCCCTCGGGGATTAGTCCTAGTGACTGGGCCAACAGGTT
CGGGTAAGAGTACCACACTTGCCGCTATGGTGGATTACGTTAACGAAAATCGACACGATCACATCTTAACCATTGAAGAT
CCTATCGAATTCGTACACCAAAATAAGCAATGTTTGATTAACCAGCGTGAAGTTCACCGCCATACCCACAGCTTTAATGC
GGCGCTTAGAAGCGCACTACGTGAAGATCCGGACGTGATTTTAGTCGGTGAGATGCGTGACCTTGAAACCATTCGTTTGG
CGATGACCGCTGCAGAAACGGGCCACTTAGTGTTTGGTACCTTGCATACCACCTCTGCCGCGAAAACCATTGACCGTGTG
GTCGACGTATTCCCCGCCGGTGAAAAAGACATGGTGCGCACTATGTTGTCGGAATCGCTGCAAGCGGTTATTTCGCAAAC
CCTGATTAAAAAGGTAGGCGGAGGCCGTGTCGCCGCCCATGAAATCATGATGGGCACTCCCGCTATTCGTAACCTTATTC
GTGAAGACAAAGTGGCGCAGATGTATTCGGCGATTCAAACCGGTATGGCCCACGGAATGCAGACCTTAGAGCAATGTTTA
CAGAACTTAGTCAATCGCGGTCTTATCACCCGTGAAGATGCAATGGCGAAGAGTTCGAATAAACAAGCGACATTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.409

99.13

0.797
  pilT Acinetobacter baumannii D1279779

80.409

99.13

0.797
  pilT Acinetobacter baumannii strain A118

80.409

99.13

0.797
  pilT Acinetobacter baylyi ADP1

77.843

99.42

0.774
  pilT Pseudomonas aeruginosa PAK

78.698

97.971

0.771
  pilT Pseudomonas stutzeri DSM 10701

77.485

99.13

0.768
  pilT Legionella pneumophila strain Lp02

75.367

98.841

0.745
  pilT Legionella pneumophila strain ERS1305867

75.367

98.841

0.745
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

73.294

97.681

0.716
  pilT Vibrio cholerae strain A1552

73.294

97.681

0.716
  pilT Neisseria meningitidis 8013

69.767

99.71

0.696
  pilT Neisseria gonorrhoeae MS11

69.477

99.71

0.693
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.558

98.261

0.487
  pilU Pseudomonas stutzeri DSM 10701

41.983

99.42

0.417
  pilU Vibrio cholerae strain A1552

41.399

99.42

0.412
  pilU Acinetobacter baylyi ADP1

39.763

97.681

0.388