Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB5J87_RS06185 Genome accession   NZ_CP163520
Coordinates   1383570..1384601 (+) Length   343 a.a.
NCBI ID   WP_369374810.1    Uniprot ID   -
Organism   Streptomyces sp. cg36     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1378570..1389601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J87_RS06175 (AB5J87_06175) - 1379709..1381703 (-) 1995 WP_369374806.1 Xaa-Pro dipeptidyl-peptidase -
  AB5J87_RS06180 (AB5J87_06180) - 1381895..1383391 (+) 1497 WP_369374808.1 M1 family metallopeptidase -
  AB5J87_RS06185 (AB5J87_06185) cytR 1383570..1384601 (+) 1032 WP_369374810.1 LacI family DNA-binding transcriptional regulator Regulator
  AB5J87_RS06190 (AB5J87_06190) - 1384564..1385478 (-) 915 WP_369374812.1 oxygenase MpaB family protein -
  AB5J87_RS06195 (AB5J87_06195) sph 1385741..1386733 (+) 993 WP_369374814.1 sphingomyelin phosphodiesterase -
  AB5J87_RS06200 (AB5J87_06200) - 1386831..1387568 (+) 738 WP_369374816.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36634.54 Da        Isoelectric Point: 6.7687

>NTDB_id=926415 AB5J87_RS06185 WP_369374810.1 1383570..1384601(+) (cytR) [Streptomyces sp. cg36]
MTEQYAGSRPTLEAVAARAGVSRATASRVVNGGTGVRPPLVDKVRRAVEELGYVPNHAARTLVTRRTEAVAVIIAEPEVR
IFSDPFFSQQIRGISKELTAHDTQLVLLLVEGPGDYDRIARYLAGGHVDGALAFSLHTDDPLPAMARRARVPTVYGGRPG
WTVAPDEEPVAYVDADNRGGARAAVRHLLALGRTRIAHICGPRDQTSATDRLDGYRDVLPGPAAELVEEGAFTVESGARA
MARLLERRPDLDAVFAANDLMASGALRVLRERGRRVPEDVAVVGFDDMSGVAETTDPPLTTVRQDIEGMGRLMARLLLRG
AADGGPGPSSVITETALVRRASA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=926415 AB5J87_RS06185 WP_369374810.1 1383570..1384601(+) (cytR) [Streptomyces sp. cg36]
TTGACCGAGCAGTACGCCGGGTCCCGGCCCACCCTGGAAGCCGTCGCGGCGCGGGCCGGGGTCTCCCGGGCCACCGCCTC
CCGGGTGGTCAACGGCGGCACGGGCGTACGGCCGCCGCTCGTCGACAAGGTGCGCCGGGCGGTCGAGGAGCTCGGTTACG
TGCCCAACCACGCCGCCCGCACCCTGGTGACCCGGCGCACCGAGGCCGTCGCCGTGATCATCGCCGAGCCGGAGGTCCGG
ATCTTCTCCGATCCGTTCTTCTCCCAGCAGATCCGGGGCATCAGCAAGGAACTGACCGCGCACGACACCCAGTTGGTGCT
GCTCCTGGTGGAGGGGCCGGGCGACTACGACCGGATCGCGCGCTATCTGGCGGGCGGCCACGTGGACGGCGCGCTGGCCT
TCTCGCTGCACACCGACGACCCGCTGCCCGCGATGGCCCGCCGCGCCCGGGTGCCCACGGTGTACGGGGGCCGCCCGGGC
TGGACGGTGGCACCGGACGAGGAGCCGGTGGCGTACGTGGACGCCGACAACCGGGGCGGCGCGCGGGCGGCCGTGCGCCA
TCTGCTCGCGCTCGGCCGCACCCGGATCGCCCACATCTGCGGCCCGCGCGACCAGACTTCGGCCACCGACCGGCTCGACG
GCTACCGCGACGTGCTGCCCGGCCCGGCCGCGGAGCTGGTGGAGGAGGGCGCCTTCACGGTGGAGAGCGGGGCCCGCGCG
ATGGCCCGGCTGCTGGAGCGGCGCCCGGACCTGGACGCGGTGTTCGCCGCCAACGACCTGATGGCGTCGGGTGCGTTGCG
CGTGCTGCGCGAGCGCGGGCGCCGGGTGCCCGAGGACGTGGCGGTGGTCGGCTTCGACGACATGAGCGGGGTGGCCGAGA
CGACCGACCCGCCGCTGACCACCGTCCGCCAGGACATAGAAGGGATGGGCCGGCTGATGGCGCGGCTGCTGCTGCGCGGC
GCGGCCGACGGGGGCCCGGGGCCGAGCTCGGTGATCACCGAGACGGCGCTGGTGCGGCGGGCCTCGGCGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-342)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.942

100

0.362