Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | U0O11_RS00875 | Genome accession | NZ_CP142020 |
| Coordinates | 189970..191001 (+) | Length | 343 a.a. |
| NCBI ID | WP_043333445.1 | Uniprot ID | A0AAP4TYL5 |
| Organism | Cobetia sp. D5 isolate Qingdao | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 184970..196001
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U0O11_RS00850 (U0O11_00850) | metW | 185290..185904 (-) | 615 | WP_153635072.1 | methionine biosynthesis protein MetW | - |
| U0O11_RS00855 (U0O11_00855) | - | 185897..187090 (-) | 1194 | WP_324691108.1 | homoserine O-acetyltransferase | - |
| U0O11_RS00860 (U0O11_00860) | - | 187360..187941 (-) | 582 | WP_043333437.1 | YggT family protein | - |
| U0O11_RS00865 (U0O11_00865) | proC | 188091..188933 (-) | 843 | WP_324691111.1 | pyrroline-5-carboxylate reductase | - |
| U0O11_RS00870 (U0O11_00870) | - | 189022..189774 (-) | 753 | WP_279836957.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| U0O11_RS00875 (U0O11_00875) | pilT | 189970..191001 (+) | 1032 | WP_043333445.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| U0O11_RS00880 (U0O11_00880) | pilU | 191141..192295 (+) | 1155 | WP_043333447.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| U0O11_RS00885 (U0O11_00885) | - | 192386..193534 (-) | 1149 | WP_324691114.1 | anhydro-N-acetylmuramic acid kinase | - |
| U0O11_RS00890 (U0O11_00890) | tyrS | 193690..194898 (+) | 1209 | WP_279836955.1 | tyrosine--tRNA ligase | - |
Sequence
Protein
Download Length: 343 a.a. Molecular weight: 37712.34 Da Isoelectric Point: 6.0550
>NTDB_id=921095 U0O11_RS00875 WP_043333445.1 189970..191001(+) (pilT) [Cobetia sp. D5 isolate Qingdao]
MDITELLAFSAKQNASDLHLSAGLPPMIRVDGDVRRINVPSMDDKQVRALIYEIMNDKQRRDFEEFLETDFSFEVPGVSR
FRVNAFHQGRGAGAVFRTIPSEVLTMEDLGLGEAFRKMCMLPRGLILVTGPTGSGKSTTLAAMVDYINENKYDHILTIED
PVEFVHQSKRCLVNQREVHRDTHGFAPALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTTSATKTVDRI
IDVFPGEEKSMVRSMLSESLQGVIAQTLLKKIGGGRVAAHEIMIATPAIRNLIREDKVAQMYSSIQTGGALGMQTLDAAL
TRLLAEGLVTNEDAQAKAKGLLS
MDITELLAFSAKQNASDLHLSAGLPPMIRVDGDVRRINVPSMDDKQVRALIYEIMNDKQRRDFEEFLETDFSFEVPGVSR
FRVNAFHQGRGAGAVFRTIPSEVLTMEDLGLGEAFRKMCMLPRGLILVTGPTGSGKSTTLAAMVDYINENKYDHILTIED
PVEFVHQSKRCLVNQREVHRDTHGFAPALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTTSATKTVDRI
IDVFPGEEKSMVRSMLSESLQGVIAQTLLKKIGGGRVAAHEIMIATPAIRNLIREDKVAQMYSSIQTGGALGMQTLDAAL
TRLLAEGLVTNEDAQAKAKGLLS
Nucleotide
Download Length: 1032 bp
>NTDB_id=921095 U0O11_RS00875 WP_043333445.1 189970..191001(+) (pilT) [Cobetia sp. D5 isolate Qingdao]
ATGGATATTACCGAACTGCTGGCTTTTTCGGCAAAACAGAACGCGTCGGATCTTCACCTGTCCGCTGGTTTGCCACCGAT
GATTCGTGTCGACGGTGATGTGCGGCGCATCAATGTGCCGTCAATGGATGACAAGCAGGTGCGCGCGCTGATCTACGAGA
TCATGAACGACAAGCAGCGCCGTGACTTCGAGGAATTCCTCGAGACCGATTTCTCCTTCGAGGTGCCGGGTGTCTCGCGC
TTTCGTGTCAACGCCTTCCATCAGGGGCGTGGCGCGGGGGCCGTCTTCCGTACCATCCCCTCGGAAGTGCTGACGATGGA
GGATCTGGGGCTCGGCGAAGCCTTCCGCAAGATGTGCATGCTGCCGCGCGGCCTGATTCTTGTCACCGGGCCGACCGGCT
CCGGTAAATCCACCACGCTGGCGGCGATGGTCGATTACATCAACGAGAACAAGTACGACCACATCCTCACCATCGAGGAC
CCGGTGGAATTCGTGCACCAGTCCAAGCGGTGTCTGGTCAACCAGCGTGAAGTGCATCGTGATACCCACGGCTTCGCGCC
CGCGCTGCGTTCGGCGCTGCGTGAAGACCCGGATGTCATTCTGGTCGGCGAGCTGCGAGATCTCGAGACCATCCGCCTGG
CACTGACCGCGGCCGAGACGGGTCACCTGGTGTTCGGCACCCTGCACACCACCTCCGCGACCAAGACCGTCGACCGTATC
ATCGACGTCTTCCCCGGCGAGGAGAAGTCGATGGTGCGCTCGATGCTGTCCGAGTCCCTGCAGGGCGTCATCGCCCAGAC
ACTGCTCAAGAAGATTGGCGGTGGCCGGGTGGCGGCTCACGAGATCATGATCGCGACGCCTGCCATTCGTAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCCTCCATCCAGACCGGTGGCGCCCTGGGCATGCAGACACTGGATGCAGCGCTG
ACGCGTCTGTTGGCGGAAGGGCTGGTGACCAATGAAGATGCTCAGGCGAAAGCCAAGGGCTTGTTGAGCTGA
ATGGATATTACCGAACTGCTGGCTTTTTCGGCAAAACAGAACGCGTCGGATCTTCACCTGTCCGCTGGTTTGCCACCGAT
GATTCGTGTCGACGGTGATGTGCGGCGCATCAATGTGCCGTCAATGGATGACAAGCAGGTGCGCGCGCTGATCTACGAGA
TCATGAACGACAAGCAGCGCCGTGACTTCGAGGAATTCCTCGAGACCGATTTCTCCTTCGAGGTGCCGGGTGTCTCGCGC
TTTCGTGTCAACGCCTTCCATCAGGGGCGTGGCGCGGGGGCCGTCTTCCGTACCATCCCCTCGGAAGTGCTGACGATGGA
GGATCTGGGGCTCGGCGAAGCCTTCCGCAAGATGTGCATGCTGCCGCGCGGCCTGATTCTTGTCACCGGGCCGACCGGCT
CCGGTAAATCCACCACGCTGGCGGCGATGGTCGATTACATCAACGAGAACAAGTACGACCACATCCTCACCATCGAGGAC
CCGGTGGAATTCGTGCACCAGTCCAAGCGGTGTCTGGTCAACCAGCGTGAAGTGCATCGTGATACCCACGGCTTCGCGCC
CGCGCTGCGTTCGGCGCTGCGTGAAGACCCGGATGTCATTCTGGTCGGCGAGCTGCGAGATCTCGAGACCATCCGCCTGG
CACTGACCGCGGCCGAGACGGGTCACCTGGTGTTCGGCACCCTGCACACCACCTCCGCGACCAAGACCGTCGACCGTATC
ATCGACGTCTTCCCCGGCGAGGAGAAGTCGATGGTGCGCTCGATGCTGTCCGAGTCCCTGCAGGGCGTCATCGCCCAGAC
ACTGCTCAAGAAGATTGGCGGTGGCCGGGTGGCGGCTCACGAGATCATGATCGCGACGCCTGCCATTCGTAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCCTCCATCCAGACCGGTGGCGCCCTGGGCATGCAGACACTGGATGCAGCGCTG
ACGCGTCTGTTGGCGGAAGGGCTGGTGACCAATGAAGATGCTCAGGCGAAAGCCAAGGGCTTGTTGAGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
84.071 |
98.834 |
0.831 |
| pilT | Pseudomonas aeruginosa PAK |
82.301 |
98.834 |
0.813 |
| pilT | Acinetobacter baumannii D1279779 |
78.466 |
98.834 |
0.776 |
| pilT | Acinetobacter baumannii strain A118 |
78.466 |
98.834 |
0.776 |
| pilT | Acinetobacter nosocomialis M2 |
78.171 |
98.834 |
0.773 |
| pilT | Acinetobacter baylyi ADP1 |
77.876 |
98.834 |
0.77 |
| pilT | Legionella pneumophila strain Lp02 |
72.781 |
98.542 |
0.717 |
| pilT | Legionella pneumophila strain ERS1305867 |
72.781 |
98.542 |
0.717 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
70.326 |
98.251 |
0.691 |
| pilT | Vibrio cholerae strain A1552 |
70.326 |
98.251 |
0.691 |
| pilT | Neisseria meningitidis 8013 |
65.689 |
99.417 |
0.653 |
| pilT | Neisseria gonorrhoeae MS11 |
65.396 |
99.417 |
0.65 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.327 |
98.834 |
0.507 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.985 |
97.668 |
0.42 |
| pilU | Vibrio cholerae strain A1552 |
41.194 |
97.668 |
0.402 |
| pilU | Acinetobacter baylyi ADP1 |
39.412 |
99.125 |
0.391 |