Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   SOM08_RS19670 Genome accession   NZ_CP139793
Coordinates   4112838..4113881 (+) Length   347 a.a.
NCBI ID   WP_116959637.1    Uniprot ID   -
Organism   Hydrogenophaga sp. SNF1     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4107838..4118881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOM08_RS19655 (SOM08_19655) - 4108393..4111389 (-) 2997 WP_322470719.1 L-glutamate gamma-semialdehyde dehydrogenase -
  SOM08_RS19660 (SOM08_19660) - 4111488..4111958 (+) 471 WP_116959639.1 Lrp/AsnC ligand binding domain-containing protein -
  SOM08_RS19665 (SOM08_19665) - 4112074..4112796 (-) 723 WP_070399419.1 YggS family pyridoxal phosphate-dependent enzyme -
  SOM08_RS19670 (SOM08_19670) pilT 4112838..4113881 (+) 1044 WP_116959637.1 type IV pilus twitching motility protein PilT Machinery gene
  SOM08_RS19675 (SOM08_19675) pilU 4113907..4115043 (+) 1137 WP_116959636.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  SOM08_RS19680 (SOM08_19680) - 4115099..4115992 (+) 894 WP_181936503.1 NAD(P)-dependent oxidoreductase -
  SOM08_RS19685 (SOM08_19685) - 4116006..4116791 (-) 786 WP_116959634.1 hypothetical protein -
  SOM08_RS19690 (SOM08_19690) - 4116814..4117059 (-) 246 WP_322469562.1 hypothetical protein -
  SOM08_RS19695 (SOM08_19695) - 4117169..4118086 (+) 918 WP_181936502.1 DMT family transporter -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38188.85 Da        Isoelectric Point: 6.8846

>NTDB_id=911052 SOM08_RS19670 WP_116959637.1 4112838..4113881(+) (pilT) [Hydrogenophaga sp. SNF1]
MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINVDALDHKAVHSMVYDIMNDSQRKQYEEFMECDFSFEIEGLAR
FRVNAFNQNRGAGAVFRTIPSKILTLEQLNAPKIFADLALRPRGLVLVTGPTGSGKSTTLAGMINHLNETEYGHILTVED
PVEFVHESKKCLVNQREVGPHTLSFSNALRSALREDPDAILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKEMVRAMLSESLVAVISQTLCKLKDGSGRVAAHEIMLGTSAIRNLIREAKVAQMYSAIQTGNSAGMQTLDQN
LTDLVRRNIISPAEARSKAKIPENFPG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=911052 SOM08_RS19670 WP_116959637.1 4112838..4113881(+) (pilT) [Hydrogenophaga sp. SNF1]
ATGGACATCACCCAACTGCTGGCTTTCAGCGTCAAGAACAAAGCTTCCGATCTTCATTTGTCCGCCGGGTTGCCGCCCAT
GATACGGGTGCATGGCGATGTGCGACGCATCAACGTCGACGCGCTGGACCACAAGGCCGTTCATTCGATGGTGTACGACA
TCATGAACGACAGCCAGCGCAAGCAGTACGAGGAGTTCATGGAATGCGACTTCTCGTTCGAGATCGAGGGCTTGGCGCGC
TTTCGCGTCAACGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGTTCCGAACCATCCCGAGCAAGATCCTCACGCTGGA
GCAGCTCAACGCGCCCAAGATCTTCGCCGACCTGGCGCTGCGTCCGCGCGGCCTGGTGCTGGTGACCGGGCCCACGGGCT
CGGGCAAGTCGACCACCCTGGCCGGCATGATCAACCACCTCAATGAGACCGAGTACGGCCACATCCTCACCGTGGAAGAC
CCGGTGGAGTTCGTGCACGAATCCAAGAAGTGCCTGGTCAACCAGCGCGAGGTGGGCCCGCACACCCTGAGCTTCTCCAA
CGCCCTGCGCTCGGCCCTGCGCGAAGACCCGGACGCCATCCTCGTGGGCGAGATGCGCGACCTGGAGACCATCCGCCTGG
CCATGACGGCGGCCGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCTCCAGCGCCGCCAAGACCATCGACCGCATC
ATCGACGTTTTCCCCGCCGAGGAAAAAGAGATGGTGCGCGCCATGCTGTCCGAGTCGCTGGTGGCCGTCATCTCGCAGAC
GCTGTGCAAGCTCAAGGACGGCAGCGGCCGCGTGGCCGCGCACGAAATCATGCTGGGCACCAGCGCCATTCGCAACCTCA
TCCGCGAGGCCAAGGTGGCGCAGATGTACTCGGCCATCCAGACCGGCAACAGCGCGGGCATGCAGACGCTGGACCAGAAC
CTCACCGATCTGGTGCGCCGCAACATCATCAGCCCGGCCGAGGCGCGCAGCAAGGCCAAGATTCCCGAGAACTTCCCGGG
CTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

77.101

99.424

0.767
  pilT Pseudomonas stutzeri DSM 10701

76.232

99.424

0.758
  pilT Acinetobacter nosocomialis M2

76.232

99.424

0.758
  pilT Acinetobacter baumannii D1279779

76.232

99.424

0.758
  pilT Acinetobacter baumannii strain A118

76.232

99.424

0.758
  pilT Acinetobacter baylyi ADP1

74.783

99.424

0.744
  pilT Legionella pneumophila strain Lp02

73.451

97.695

0.718
  pilT Legionella pneumophila strain ERS1305867

73.451

97.695

0.718
  pilT Neisseria meningitidis 8013

67.246

99.424

0.669
  pilT Neisseria gonorrhoeae MS11

66.957

99.424

0.666
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

66.569

98.271

0.654
  pilT Vibrio cholerae strain A1552

66.569

98.271

0.654
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.594

99.424

0.513
  pilU Vibrio cholerae strain A1552

42.388

96.542

0.409
  pilU Acinetobacter baylyi ADP1

41.04

99.712

0.409
  pilU Pseudomonas stutzeri DSM 10701

41.493

96.542

0.401