Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   SOM08_RS19675 Genome accession   NZ_CP139793
Coordinates   4113907..4115043 (+) Length   378 a.a.
NCBI ID   WP_116959636.1    Uniprot ID   -
Organism   Hydrogenophaga sp. SNF1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4108907..4120043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOM08_RS19660 (SOM08_19660) - 4111488..4111958 (+) 471 WP_116959639.1 Lrp/AsnC ligand binding domain-containing protein -
  SOM08_RS19665 (SOM08_19665) - 4112074..4112796 (-) 723 WP_070399419.1 YggS family pyridoxal phosphate-dependent enzyme -
  SOM08_RS19670 (SOM08_19670) pilT 4112838..4113881 (+) 1044 WP_116959637.1 type IV pilus twitching motility protein PilT Machinery gene
  SOM08_RS19675 (SOM08_19675) pilU 4113907..4115043 (+) 1137 WP_116959636.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  SOM08_RS19680 (SOM08_19680) - 4115099..4115992 (+) 894 WP_181936503.1 NAD(P)-dependent oxidoreductase -
  SOM08_RS19685 (SOM08_19685) - 4116006..4116791 (-) 786 WP_116959634.1 hypothetical protein -
  SOM08_RS19690 (SOM08_19690) - 4116814..4117059 (-) 246 WP_322469562.1 hypothetical protein -
  SOM08_RS19695 (SOM08_19695) - 4117169..4118086 (+) 918 WP_181936502.1 DMT family transporter -
  SOM08_RS19700 (SOM08_19700) - 4118096..4119868 (+) 1773 WP_116959632.1 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 41836.26 Da        Isoelectric Point: 6.9598

>NTDB_id=911053 SOM08_RS19675 WP_116959636.1 4113907..4115043(+) (pilU) [Hydrogenophaga sp. SNF1]
MERDQASKFINDLLRLMLSRGGSDLFITADFPPAIKVDGAVTKVSPQPLTAGHTLALARAIMNDKQAAEFERTKECNFAI
SPPAIGRFRCNAFIQQGKVGLVLRTIPAVLPTIDKLGLPQVLKDVAMSKRGLCILVGATGSGKSTSLAAMVDWRNEHSYG
HIVTVEDPIEFVHPHKNCVVTQREVGLDTESWAAALKNTLRQAPDVILMGEIRDRETMEHAIQFAETGHLCLATLHANSA
NQALDRIINFFPEERRAQLLMDLSLNLRSLISQRLVPRQDNKGRYAAVEILLNSPLISDLIFKGEVAEIKEVMKKSTQMG
MQTFDQALFDAFESNLITYEDALRNADSLNDLRLQIKLNSQRAKTLDLAAGTEHLTIV

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=911053 SOM08_RS19675 WP_116959636.1 4113907..4115043(+) (pilU) [Hydrogenophaga sp. SNF1]
ATGGAACGCGATCAGGCATCCAAATTCATCAACGACCTGCTGCGGCTCATGCTCAGCCGCGGCGGCAGCGACCTGTTCAT
CACGGCCGACTTCCCGCCCGCGATCAAGGTCGACGGCGCGGTCACCAAGGTCTCGCCTCAGCCGCTGACGGCGGGCCACA
CGCTGGCGCTGGCGCGCGCCATCATGAACGACAAGCAGGCCGCCGAGTTCGAGCGCACCAAGGAGTGCAACTTCGCGATC
TCGCCGCCCGCCATCGGGCGCTTTCGCTGCAATGCCTTCATCCAGCAGGGCAAGGTCGGCCTGGTGCTGCGGACCATTCC
CGCCGTGCTGCCCACGATCGACAAGCTGGGCCTGCCACAGGTGCTCAAAGACGTGGCCATGTCCAAGCGTGGCCTGTGCA
TCCTGGTGGGAGCCACCGGCTCGGGCAAGTCCACCTCGCTCGCGGCCATGGTCGACTGGCGCAACGAGCATTCCTACGGC
CATATCGTGACGGTGGAAGACCCGATCGAGTTCGTGCACCCGCACAAGAACTGCGTGGTGACGCAGCGCGAGGTCGGACT
GGACACCGAAAGCTGGGCGGCGGCGCTCAAGAACACCCTGCGCCAGGCGCCCGACGTGATCCTCATGGGAGAAATCCGCG
ACCGCGAGACCATGGAGCACGCGATCCAGTTCGCCGAGACCGGCCACCTGTGCCTGGCCACGCTGCACGCCAACAGCGCC
AACCAGGCGCTGGACCGCATCATCAACTTCTTCCCCGAAGAGCGCCGCGCCCAACTGCTGATGGACCTGTCGCTCAACCT
GCGCTCGCTGATCTCGCAGCGGCTGGTGCCGCGGCAGGACAACAAGGGCCGCTACGCCGCGGTCGAGATCCTGCTCAACT
CGCCCCTCATCTCCGACCTGATCTTCAAGGGCGAAGTGGCCGAGATCAAGGAAGTGATGAAGAAGAGCACCCAGATGGGC
ATGCAGACCTTCGACCAGGCCCTGTTCGACGCCTTCGAGTCCAACCTCATCACCTACGAGGACGCGCTGCGCAACGCCGA
CTCGCTCAACGACCTGCGCCTGCAGATCAAGCTCAACAGCCAACGCGCCAAGACCCTGGACCTGGCGGCCGGCACCGAGC
ACCTGACCATCGTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(122-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

60.383

96.825

0.585
  pilU Acinetobacter baylyi ADP1

56.546

94.974

0.537
  pilU Vibrio cholerae strain A1552

55.172

92.063

0.508
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.994

89.153

0.41
  pilT Pseudomonas aeruginosa PAK

44.51

89.153

0.397
  pilT Legionella pneumophila strain ERS1305867

42.643

88.095

0.376
  pilT Legionella pneumophila strain Lp02

42.643

88.095

0.376
  pilT Acinetobacter baumannii strain A118

44.514

84.392

0.376
  pilT Acinetobacter nosocomialis M2

44.514

84.392

0.376
  pilT Acinetobacter baumannii D1279779

44.514

84.392

0.376
  pilT Pseudomonas stutzeri DSM 10701

42.136

89.153

0.376
  pilT Acinetobacter baylyi ADP1

43.887

84.392

0.37
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

43.533

83.862

0.365
  pilT Vibrio cholerae strain A1552

43.533

83.862

0.365