Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   SOJ49_RS18605 Genome accession   NZ_CP139482
Coordinates   4111336..4112370 (-) Length   344 a.a.
NCBI ID   WP_369855980.1    Uniprot ID   -
Organism   Candidatus Thalassolituus haligoni strain BB40     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4106336..4117370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOJ49_RS18570 moaB 4106756..4107301 (+) 546 WP_369855974.1 molybdenum cofactor biosynthesis protein B -
  SOJ49_RS18575 moaC 4107446..4107904 (+) 459 WP_369858087.1 cyclic pyranopterin monophosphate synthase MoaC -
  SOJ49_RS18580 - 4107901..4108152 (+) 252 WP_369855975.1 MoaD/ThiS family protein -
  SOJ49_RS18585 moaE 4108155..4108652 (+) 498 WP_369855976.1 molybdopterin synthase catalytic subunit MoaE -
  SOJ49_RS18590 - 4108729..4109190 (+) 462 WP_369855977.1 isoprenylcysteine carboxylmethyltransferase family protein -
  SOJ49_RS18595 - 4109266..4110078 (+) 813 WP_369855978.1 class III extradiol ring-cleavage dioxygenase -
  SOJ49_RS18600 pilU 4110186..4111301 (-) 1116 WP_369855979.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  SOJ49_RS18605 pilT 4111336..4112370 (-) 1035 WP_369855980.1 type IV pilus twitching motility protein PilT Machinery gene
  SOJ49_RS18610 - 4112519..4113223 (+) 705 WP_369855981.1 YggS family pyridoxal phosphate-dependent enzyme -
  SOJ49_RS18615 proC 4113257..4114075 (+) 819 WP_369855982.1 pyrroline-5-carboxylate reductase -
  SOJ49_RS18620 - 4114133..4114723 (+) 591 WP_369855983.1 YggT family protein -
  SOJ49_RS18625 dauA 4114873..4116648 (+) 1776 WP_369855984.1 C4-dicarboxylic acid transporter DauA -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37922.43 Da        Isoelectric Point: 6.5090

>NTDB_id=909968 SOJ49_RS18605 WP_369855980.1 4111336..4112370(-) (pilT) [Candidatus Thalassolituus haligoni strain BB40]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINVPALAHKEVHSLVYDIMNDKQRKDFEEYLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLNMDQLGMGEVFKDLANIPRGIVLVTGPTGSGKSTTLAAIIDYINDTKHDHILTIED
PIEFVHESKKSLINQREVHRDTLGFNESLRSALREDPDVILVGEMRDLETIRLALTAAETGHVVFGTLHTTSAAKTIDRI
VDVFPAEEKSMVRSMLSESLQGVISQTLLKRVGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSSIQTGAAYGMITMDQSL
KTLLARGLISREAAREKAKNPDSF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=909968 SOJ49_RS18605 WP_369855980.1 4111336..4112370(-) (pilT) [Candidatus Thalassolituus haligoni strain BB40]
ATGGATATTACCGAATTGCTGGCATTCAGTGCCAAACAAGGCGCTTCGGATTTGCATTTGTCGGCGGGCTTGCCCCCAAT
GATTCGTGTTGATGGCGATGTCCGCCGGATAAACGTTCCGGCGCTGGCTCATAAAGAGGTGCACTCGCTGGTGTACGACA
TTATGAACGATAAACAGCGCAAGGATTTCGAAGAATATCTCGAAACCGATTTTTCCTTCGAAGTGCCCGGCGTCGCCCGT
TTTCGTGTCAACGCCTTTAACCAGAATCGCGGTGCCGGTGCGGTATTCCGGACGATTCCATCCAAGGTGCTGAACATGGA
TCAGCTGGGTATGGGCGAGGTGTTCAAGGATCTGGCTAATATACCGCGTGGTATTGTGCTGGTGACCGGGCCAACCGGTT
CTGGCAAGTCGACGACGCTGGCGGCCATCATCGACTATATCAACGACACCAAACACGACCACATCCTGACCATTGAAGAT
CCGATCGAATTTGTGCACGAGTCAAAAAAGAGCCTGATTAACCAGCGCGAAGTACACCGTGACACTCTGGGTTTTAACGA
ATCCCTGCGCTCTGCCTTGCGGGAAGACCCGGATGTGATTCTGGTGGGCGAGATGCGAGACCTGGAAACTATTCGGCTGG
CGCTGACGGCGGCAGAAACCGGTCACGTGGTGTTTGGCACATTGCACACCACCTCGGCGGCCAAGACCATCGACCGGATC
GTCGACGTTTTTCCGGCCGAAGAAAAATCGATGGTACGTTCGATGCTGTCGGAGTCCCTGCAGGGGGTCATTTCCCAGAC
CTTGCTGAAGCGGGTTGGTGGTGGCCGGGTAGCGGCCCACGAAATCATGATTGGTACACCGGCGATTCGTAACCTGATTC
GTGAAGACAAGGTGGCGCAAATGTATTCGTCGATCCAGACCGGTGCAGCCTACGGCATGATTACCATGGATCAGTCGCTC
AAGACGTTGCTGGCCCGTGGTCTTATTTCTCGCGAAGCGGCGCGGGAAAAAGCCAAAAATCCGGATTCTTTCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

86.047

100

0.86
  pilT Pseudomonas aeruginosa PAK

85.756

100

0.858
  pilT Acinetobacter baumannii D1279779

82.849

100

0.828
  pilT Acinetobacter baumannii strain A118

82.849

100

0.828
  pilT Acinetobacter nosocomialis M2

82.558

100

0.826
  pilT Acinetobacter baylyi ADP1

80.523

100

0.805
  pilT Legionella pneumophila strain Lp02

71.512

100

0.715
  pilT Legionella pneumophila strain ERS1305867

71.512

100

0.715
  pilT Neisseria gonorrhoeae MS11

68.696

100

0.689
  pilT Neisseria meningitidis 8013

68.696

100

0.689
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

69.436

97.965

0.68
  pilT Vibrio cholerae strain A1552

69.436

97.965

0.68
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.203

100

0.544
  pilU Acinetobacter baylyi ADP1

39.017

100

0.392
  pilU Vibrio cholerae strain A1552

38.841

100

0.39
  pilU Pseudomonas stutzeri DSM 10701

39.701

97.384

0.387