Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | SMG00_RS20715 | Genome accession | NZ_CP139417 |
| Coordinates | 4440608..4441642 (-) | Length | 344 a.a. |
| NCBI ID | WP_125872068.1 | Uniprot ID | - |
| Organism | Stutzerimonas stutzeri strain H46 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4435608..4446642
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMG00_RS20695 | - | 4436828..4437223 (-) | 396 | WP_011914966.1 | TM2 domain-containing protein | - |
| SMG00_RS20700 | - | 4437359..4438573 (+) | 1215 | WP_053528278.1 | putative DNA modification/repair radical SAM protein | - |
| SMG00_RS20705 | - | 4438573..4439406 (+) | 834 | WP_320893108.1 | TIGR03915 family putative DNA repair protein | - |
| SMG00_RS20710 | pilU | 4439403..4440548 (-) | 1146 | WP_020305662.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| SMG00_RS20715 | pilT | 4440608..4441642 (-) | 1035 | WP_125872068.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| SMG00_RS20720 | - | 4441708..4442397 (+) | 690 | WP_320893109.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| SMG00_RS20725 | proC | 4442408..4443232 (+) | 825 | WP_320893110.1 | pyrroline-5-carboxylate reductase | - |
| SMG00_RS20730 | - | 4443242..4443832 (+) | 591 | WP_014598006.1 | YggT family protein | - |
| SMG00_RS20735 | - | 4444102..4446069 (+) | 1968 | WP_320893111.1 | dynamin-like GTPase family protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38100.91 Da Isoelectric Point: 6.8359
>NTDB_id=909451 SMG00_RS20715 WP_125872068.1 4440608..4441642(-) (pilT) [Stutzerimonas stutzeri strain H46]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPAMDHKQVHALIYDIMNDKQRKDYEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLNMGEVFRKITDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKSMVRSMLSESLQAVISQTLLKKIGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGGSLGMQTLDMCL
KGLLAKGLISRDSAREKAKQPENF
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPAMDHKQVHALIYDIMNDKQRKDYEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLNMGEVFRKITDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKSMVRSMLSESLQAVISQTLLKKIGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGGSLGMQTLDMCL
KGLLAKGLISRDSAREKAKQPENF
Nucleotide
Download Length: 1035 bp
>NTDB_id=909451 SMG00_RS20715 WP_125872068.1 4440608..4441642(-) (pilT) [Stutzerimonas stutzeri strain H46]
ATGGATATCACAGAACTGCTGGCCTTCAGTGCCAAGCAGGGTGCGTCGGATTTGCACCTTTCCGCCGGCCTGCCGCCGAT
GATTCGCGTCGATGGTGACGTGCGGCGCATCAACCTGCCGGCTATGGACCACAAGCAGGTGCATGCGCTGATCTACGACA
TCATGAACGACAAGCAGCGCAAGGATTACGAGGAATTCCTCGAAACCGACTTCTCGTTCGAGGTGCCGGGTGTGGCGCGC
TTCCGCGTCAACGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGTTCCGGACCATTCCCTCCAAGGTGCTGACCATGGA
GGACCTCAACATGGGTGAGGTCTTCCGCAAGATCACCGACGTGCCGCGTGGGCTGGTGCTGGTCACCGGGCCTACCGGCT
CGGGTAAGTCGACCACCCTGGCGGCGATGCTCGATTACCTGAACAACACCAAATACCACCACATCCTCACCATCGAAGAC
CCGATCGAATTCGTTCACGAATCGAAGAAGTGCCTGGTCAACCAGCGTGAAGTGCATCGCGACACCCTGGGCTTCAACGA
GGCGCTGCGTTCGGCCCTACGTGAAGACCCGGACATTATTCTGGTCGGCGAGATGCGCGATCTGGAGACCATCCGCCTGG
CGCTGACTGCTGCGGAAACCGGTCACCTGGTGTTCGGCACCCTGCACACCACCTCCGCCGCCAAGACCATCGACCGCGTG
GTCGACGTGTTCCCGGCCGAAGAAAAGTCCATGGTCCGCTCGATGCTCTCCGAATCGCTGCAGGCGGTGATCTCGCAGAC
CCTGCTGAAGAAGATCGGCGGCGGCCGCGTCGCTGCCCACGAGATCATGATCGGCACCCCGGCGATCCGTAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTACTCGGCGATCCAGACCGGCGGTTCGCTCGGCATGCAGACCCTGGACATGTGCCTC
AAGGGGCTGCTGGCCAAGGGCCTGATCAGCCGCGACAGCGCGCGGGAAAAGGCCAAGCAGCCCGAGAATTTCTAA
ATGGATATCACAGAACTGCTGGCCTTCAGTGCCAAGCAGGGTGCGTCGGATTTGCACCTTTCCGCCGGCCTGCCGCCGAT
GATTCGCGTCGATGGTGACGTGCGGCGCATCAACCTGCCGGCTATGGACCACAAGCAGGTGCATGCGCTGATCTACGACA
TCATGAACGACAAGCAGCGCAAGGATTACGAGGAATTCCTCGAAACCGACTTCTCGTTCGAGGTGCCGGGTGTGGCGCGC
TTCCGCGTCAACGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGTTCCGGACCATTCCCTCCAAGGTGCTGACCATGGA
GGACCTCAACATGGGTGAGGTCTTCCGCAAGATCACCGACGTGCCGCGTGGGCTGGTGCTGGTCACCGGGCCTACCGGCT
CGGGTAAGTCGACCACCCTGGCGGCGATGCTCGATTACCTGAACAACACCAAATACCACCACATCCTCACCATCGAAGAC
CCGATCGAATTCGTTCACGAATCGAAGAAGTGCCTGGTCAACCAGCGTGAAGTGCATCGCGACACCCTGGGCTTCAACGA
GGCGCTGCGTTCGGCCCTACGTGAAGACCCGGACATTATTCTGGTCGGCGAGATGCGCGATCTGGAGACCATCCGCCTGG
CGCTGACTGCTGCGGAAACCGGTCACCTGGTGTTCGGCACCCTGCACACCACCTCCGCCGCCAAGACCATCGACCGCGTG
GTCGACGTGTTCCCGGCCGAAGAAAAGTCCATGGTCCGCTCGATGCTCTCCGAATCGCTGCAGGCGGTGATCTCGCAGAC
CCTGCTGAAGAAGATCGGCGGCGGCCGCGTCGCTGCCCACGAGATCATGATCGGCACCCCGGCGATCCGTAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTACTCGGCGATCCAGACCGGCGGTTCGCTCGGCATGCAGACCCTGGACATGTGCCTC
AAGGGGCTGCTGGCCAAGGGCCTGATCAGCCGCGACAGCGCGCGGGAAAAGGCCAAGCAGCCCGAGAATTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
97.674 |
100 |
0.977 |
| pilT | Pseudomonas aeruginosa PAK |
94.767 |
100 |
0.948 |
| pilT | Acinetobacter baumannii D1279779 |
85.174 |
100 |
0.852 |
| pilT | Acinetobacter baumannii strain A118 |
85.174 |
100 |
0.852 |
| pilT | Acinetobacter nosocomialis M2 |
84.884 |
100 |
0.849 |
| pilT | Acinetobacter baylyi ADP1 |
84.012 |
100 |
0.84 |
| pilT | Legionella pneumophila strain Lp02 |
74.556 |
98.256 |
0.733 |
| pilT | Legionella pneumophila strain ERS1305867 |
74.556 |
98.256 |
0.733 |
| pilT | Neisseria meningitidis 8013 |
67.536 |
100 |
0.677 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
69.139 |
97.965 |
0.677 |
| pilT | Vibrio cholerae strain A1552 |
69.139 |
97.965 |
0.677 |
| pilT | Neisseria gonorrhoeae MS11 |
67.246 |
100 |
0.674 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
52.174 |
100 |
0.523 |
| pilU | Vibrio cholerae strain A1552 |
40.708 |
98.547 |
0.401 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.896 |
97.384 |
0.398 |
| pilU | Acinetobacter baylyi ADP1 |
39.017 |
100 |
0.392 |