Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABRP08_RS00340 Genome accession   NZ_CP158353
Coordinates   71597..72265 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain 914033     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66597..77265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP08_RS00310 (ABRP08_00310) yicC 66616..67479 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  ABRP08_RS00315 (ABRP08_00315) rph 67606..68322 (+) 717 WP_001247097.1 ribonuclease PH -
  ABRP08_RS00320 (ABRP08_00320) pyrE 68388..69029 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  ABRP08_RS00325 (ABRP08_00325) slmA 69066..69662 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  ABRP08_RS00330 (ABRP08_00330) dut 69769..70227 (-) 459 WP_000976070.1 dUTP diphosphatase -
  ABRP08_RS00335 (ABRP08_00335) coaBC 70205..71425 (-) 1221 WP_061348790.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ABRP08_RS00340 (ABRP08_00340) radC 71597..72265 (+) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  ABRP08_RS00345 (ABRP08_00345) rpmB 72482..72718 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  ABRP08_RS00350 (ABRP08_00350) rpmG 72739..72906 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  ABRP08_RS00355 (ABRP08_00355) mutM 73004..73813 (+) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ABRP08_RS00360 (ABRP08_00360) coaD 73852..74331 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  ABRP08_RS00365 (ABRP08_00365) waaA 74339..75616 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ABRP08_RS00370 (ABRP08_00370) rfaQ 76029..77087 (+) 1059 WP_072318556.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=909019 ABRP08_RS00340 WP_001298959.1 71597..72265(+) (radC) [Escherichia coli strain 914033]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=909019 ABRP08_RS00340 WP_001298959.1 71597..72265(+) (radC) [Escherichia coli strain 914033]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496