Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   SDC64_RS11690 Genome accession   NZ_CP139048
Coordinates   2468067..2469104 (+) Length   345 a.a.
NCBI ID   WP_004638216.1    Uniprot ID   N9GFN0
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2463067..2474104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS11675 (SDC64_11675) - 2466226..2466498 (+) 273 WP_026070408.1 hypothetical protein -
  SDC64_RS11680 (SDC64_11680) - 2466570..2467241 (+) 672 WP_320533497.1 HAD-IA family hydrolase -
  SDC64_RS11685 (SDC64_11685) - 2467248..2467940 (-) 693 WP_320532505.1 YggS family pyridoxal phosphate-dependent enzyme -
  SDC64_RS11690 (SDC64_11690) pilT 2468067..2469104 (+) 1038 WP_004638216.1 type IV pilus twitching motility protein PilT Machinery gene
  SDC64_RS11695 (SDC64_11695) pilU 2469133..2470251 (+) 1119 WP_005081584.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  SDC64_RS11700 (SDC64_11700) fur 2470339..2470776 (-) 438 WP_004638213.1 ferric iron uptake transcriptional regulator -
  SDC64_RS11705 (SDC64_11705) - 2470888..2471286 (+) 399 WP_004638212.1 outer membrane protein assembly factor BamE -
  SDC64_RS11710 (SDC64_11710) - 2471343..2471663 (-) 321 WP_005091348.1 RnfH family protein -
  SDC64_RS11715 (SDC64_11715) - 2471663..2472745 (-) 1083 WP_151211098.1 hypothetical protein -
  SDC64_RS11720 (SDC64_11720) - 2472995..2473450 (-) 456 WP_008940857.1 bacteriohemerythrin -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38356.96 Da        Isoelectric Point: 6.3479

>NTDB_id=906959 SDC64_RS11690 WP_004638216.1 2468067..2469104(+) (pilT) [Acinetobacter haemolyticus strain JS-1us]
MDITELLAFSVKNGASDLHLSAGMPPMIRVDGEVRRINLPALEHKDVHRLVYDIMNDKQRRDFEEDLETDFSFEVPNIAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGLGTIFKEICDYPRGIVLVTGPTGSGKSTTLAAMIDYINENRYDHILTVED
PIEFVHQSKKCLINQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLVRENKVAQMYSAIQTGANYGMTTLDQSL
KSLVSKGLISPQTARTVAKQPESFL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=906959 SDC64_RS11690 WP_004638216.1 2468067..2469104(+) (pilT) [Acinetobacter haemolyticus strain JS-1us]
ATGGATATCACAGAATTACTCGCCTTTTCAGTAAAAAATGGTGCATCGGATTTACACCTTTCGGCGGGAATGCCACCTAT
GATTCGTGTAGATGGTGAGGTTCGCCGAATTAATCTACCAGCTCTAGAGCATAAAGATGTCCATCGTCTTGTTTATGACA
TCATGAATGATAAGCAACGTCGTGATTTTGAGGAAGATCTTGAAACTGACTTCTCTTTTGAAGTACCCAATATCGCACGT
TTCCGTGTCAACGCATTCAACCAAAACCGTGGTGCGGGTGCCGTATTCCGTACCATTCCATCCAAGGTTTTAACCATGGA
AGACTTGGGTTTAGGCACAATTTTCAAAGAAATTTGTGATTATCCGCGAGGAATCGTATTGGTTACTGGACCTACAGGTT
CGGGTAAATCGACAACTCTCGCAGCAATGATTGATTACATCAATGAAAATCGTTACGACCATATCCTAACGGTTGAAGAT
CCAATCGAATTTGTACACCAATCAAAAAAATGCCTGATTAACCAACGTGAAGTGCATCGTGATACCCATGGTTTTAACGA
AGCATTACGTTCTGCACTGCGTGAAGACCCTGACATTATTCTGGTCGGTGAGATGCGTGACTTAGAGACCATTCGCCTTG
CACTCACCGCAGCGGAAACAGGTCACCTTGTATTTGGTACACTGCATACCACCTCAGCAGCAAAAACCATCGACCGTGTC
ATCGACGTATTCCCAGCCGAGGAAAAAGACATGGTTCGTGCCATGCTCTCAGAATCATTACAAGCGGTAATTTCTCAAAC
CTTATTGAAAAAGAATGGCGGTGGTCGTGTGGCAGCACATGAAATCATGATCGGGATTCCTGCGATCCGTAACCTCGTCC
GTGAAAACAAAGTCGCACAAATGTATTCTGCGATTCAAACGGGAGCGAACTATGGCATGACGACTTTAGATCAAAGTCTA
AAAAGTCTGGTATCTAAAGGTCTTATTAGTCCACAAACCGCACGTACAGTTGCAAAGCAACCAGAATCATTCCTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9GFN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

96.522

100

0.965
  pilT Acinetobacter baumannii D1279779

96.232

100

0.962
  pilT Acinetobacter baumannii strain A118

96.232

100

0.962
  pilT Acinetobacter baylyi ADP1

87.5

99.71

0.872
  pilT Pseudomonas aeruginosa PAK

83.721

99.71

0.835
  pilT Pseudomonas stutzeri DSM 10701

83.43

99.71

0.832
  pilT Legionella pneumophila strain Lp02

75.581

99.71

0.754
  pilT Legionella pneumophila strain ERS1305867

75.581

99.71

0.754
  pilT Neisseria meningitidis 8013

68.116

100

0.681
  pilT Neisseria gonorrhoeae MS11

67.826

100

0.678
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

69.345

97.391

0.675
  pilT Vibrio cholerae strain A1552

69.345

97.391

0.675
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.304

100

0.513
  pilU Vibrio cholerae strain A1552

41.791

97.101

0.406
  pilU Pseudomonas stutzeri DSM 10701

41.194

97.101

0.4
  pilU Acinetobacter baylyi ADP1

39.306

100

0.394