Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABNF98_RS07260 Genome accession   NZ_CP158026
Coordinates   1450252..1450881 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   B7UN38
Organism   Escherichia coli strain FDN-4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1445252..1455881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNF98_RS07245 (ABNF98_07245) helD 1445494..1447548 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABNF98_RS07250 (ABNF98_07250) yccF 1447671..1448117 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABNF98_RS07255 (ABNF98_07255) yccS 1448127..1450289 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABNF98_RS07260 (ABNF98_07260) sxy/tfoX 1450252..1450881 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABNF98_RS07265 (ABNF98_07265) sulA 1451100..1451609 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABNF98_RS07270 (ABNF98_07270) ompA 1451965..1453017 (+) 1053 WP_001346420.1 porin OmpA -
  ABNF98_RS07275 (ABNF98_07275) matP 1453093..1453545 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABNF98_RS07280 (ABNF98_07280) ycbZ 1453731..1455491 (+) 1761 WP_000156502.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=906960 ABNF98_RS07260 WP_000839151.1 1450252..1450881(-) (sxy/tfoX) [Escherichia coli strain FDN-4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=906960 ABNF98_RS07260 WP_000839151.1 1450252..1450881(-) (sxy/tfoX) [Escherichia coli strain FDN-4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UN38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995