NTDB

Overview

Name	comEA	Type	Machinery gene
Locus tag	SGR77_RS14855	Genome accession	NZ_CP138628
Coordinates	3324087..3324272 (-)	Length	61 a.a.
NCBI ID	WP_341722308.1	Uniprot ID	-
Organism	Streptomyces rimosus isolate M4018
Function	dsDNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3319087..3329272

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGR77_RS14840 (SGR77_14840)	-	3319253..3319738 (-)	486	WP_030179786.1	Rrf2 family transcriptional regulator	-
SGR77_RS14845 (SGR77_14845)	-	3319920..3321437 (+)	1518	WP_003985026.1	substrate-binding domain-containing protein	-
SGR77_RS14850 (SGR77_14850)	-	3321340..3324090 (-)	2751	WP_003985027.1	ComEC/Rec2 family competence protein	-
SGR77_RS14855 (SGR77_14855)	comEA	3324087..3324272 (-)	186	WP_341722308.1	helix-hairpin-helix domain-containing protein	Machinery gene
SGR77_RS14860 (SGR77_14860)	-	3324269..3324931 (-)	663	WP_341722309.1	SLBB domain-containing protein	-
SGR77_RS14865 (SGR77_14865)	-	3325925..3326770 (-)	846	WP_003985029.1	DegV family protein	-
SGR77_RS14870 (SGR77_14870)	-	3326919..3327728 (-)	810	WP_003985030.1	hypothetical protein	-

Sequence

Protein

Download Length: 61 a.a. Molecular weight: 6655.56 Da Isoelectric Point: 6.4510

                                >NTDB_id=903781 SGR77_RS14855 WP_341722308.1 3324087..3324272(-) (comEA) [Streptomyces rimosus isolate M4018]

MSLNSATVEQLDALPGVGPVLARHIIEYRTAHGGFTSVEQLRDVNGIGDRRFADLRPLVQP

Nucleotide

Download Length: 186 bp

                                >NTDB_id=903781 SGR77_RS14855 WP_341722308.1 3324087..3324272(-) (comEA) [Streptomyces rimosus isolate M4018]

GTGAGCCTCAACTCCGCGACCGTGGAACAGCTCGACGCCCTTCCTGGAGTCGGCCCCGTCCTGGCCCGGCACATCATCGA

ATACCGCACCGCACACGGTGGATTCACCTCCGTGGAACAGCTCCGTGACGTGAACGGCATCGGCGACCGACGCTTCGCCG

ACCTGCGCCCTCTGGTCCAGCCATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(3-59)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comEA	Thermus thermophilus HB27	49.18	100	0.492
comEA	Streptococcus thermophilus LMD-9	46.429	91.803	0.426
comEA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.333	98.361	0.426
comEA	Legionella pneumophila str. Paris	45.455	90.164	0.41
comEA	Legionella pneumophila strain ERS1305867	45.455	90.164	0.41
comE	Neisseria gonorrhoeae MS11	44.643	91.803	0.41
comE	Neisseria gonorrhoeae MS11	44.643	91.803	0.41
comE	Neisseria gonorrhoeae MS11	44.643	91.803	0.41
comE	Neisseria gonorrhoeae MS11	44.643	91.803	0.41
comA	Synechocystis sp. PCC 6803	42.857	91.803	0.393
comEA	Latilactobacillus sakei subsp. sakei 23K	42.857	91.803	0.393
comEA	Acinetobacter baylyi ADP1	47.917	78.689	0.377
comEA/celA/cilE	Streptococcus pneumoniae D39	38.983	96.721	0.377
comEA/celA/cilE	Streptococcus mitis SK321	38.983	96.721	0.377
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	38.983	96.721	0.377
comEA/celA/cilE	Streptococcus pneumoniae Rx1	38.983	96.721	0.377
comEA/celA/cilE	Streptococcus pneumoniae R6	38.983	96.721	0.377
comEA/celA/cilE	Streptococcus mitis NCTC 12261	38.983	96.721	0.377
comEA/comE1	Glaesserella parasuis strain SC1401	38.333	98.361	0.377
comEA	Bacillus subtilis subsp. subtilis str. 168	39.286	91.803	0.361
comEA	Staphylococcus aureus MW2	39.286	91.803	0.361
comEA	Staphylococcus aureus N315	39.286	91.803	0.361
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	39.286	91.803	0.361

Detailed information NTG0903781