Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   R9X41_RS20320 Genome accession   NZ_CP137854
Coordinates   4424924..4425967 (+) Length   347 a.a.
NCBI ID   WP_318632252.1    Uniprot ID   -
Organism   Xylophilus sp. GOD-11R     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4419924..4430967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9X41_RS20300 (R9X41_20300) - 4420186..4421640 (-) 1455 WP_318632248.1 hypothetical protein -
  R9X41_RS20305 (R9X41_20305) rocF 4421879..4422787 (+) 909 WP_318632249.1 arginase -
  R9X41_RS20310 (R9X41_20310) - 4422906..4424171 (+) 1266 WP_318632250.1 MFS transporter -
  R9X41_RS20315 (R9X41_20315) - 4424182..4424877 (-) 696 WP_318632251.1 YggS family pyridoxal phosphate-dependent enzyme -
  R9X41_RS20320 (R9X41_20320) pilT 4424924..4425967 (+) 1044 WP_318632252.1 type IV pilus twitching motility protein PilT Machinery gene
  R9X41_RS20325 (R9X41_20325) - 4426046..4426681 (+) 636 WP_318632253.1 cyclic nucleotide-binding domain-containing protein -
  R9X41_RS20330 (R9X41_20330) pilU 4426725..4427864 (+) 1140 WP_318632254.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  R9X41_RS20335 (R9X41_20335) - 4428374..4429303 (+) 930 WP_318632255.1 NAD(P)-dependent oxidoreductase -
  R9X41_RS20340 (R9X41_20340) - 4429602..4430921 (-) 1320 WP_318632256.1 phospholipase A -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38298.08 Da        Isoelectric Point: 7.0289

>NTDB_id=900916 R9X41_RS20320 WP_318632252.1 4424924..4425967(+) (pilT) [Xylophilus sp. GOD-11R]
MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINVEPLDHKMVHSMVYDIMNDGQRKIYEEFLEIDFSFEIEGLAR
FRVNAFNQNRGAGAVFRTIPSKILTLEQLGAPKIFADLAMKPRGMVLVTGPTGSGKSTTLAAMVNYLNENEYGHILTVED
PIEFVHESKKCLINQREVGPHTRNFAAALRSALREDPDAILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKDMIRAMLSESLQAVISQTLCKTKDGQGRVAAHEIMLGTSAIRNLIREAKVAQMYSAIQTGNSVGMQTLDQN
LTELVRRGTITPAEARSKAKTPENFPG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=900916 R9X41_RS20320 WP_318632252.1 4424924..4425967(+) (pilT) [Xylophilus sp. GOD-11R]
TTGGATATCACTCAGTTGCTGGCCTTCAGCGTCAAGAACAAGGCCTCCGACCTGCATCTGTCGGCGGGTCTGCCGCCCAT
GATCCGGGTGCACGGCGACGTGCGCCGCATCAATGTCGAGCCGCTGGACCACAAGATGGTCCATTCGATGGTCTACGACA
TCATGAACGACGGCCAGCGCAAGATCTACGAGGAGTTCCTGGAGATCGACTTCTCCTTCGAGATCGAAGGCCTGGCGCGC
TTCCGGGTCAACGCCTTCAACCAGAACCGGGGCGCCGGTGCGGTGTTCCGCACCATTCCCTCGAAGATCCTCACGCTGGA
GCAGCTTGGCGCGCCCAAGATCTTCGCCGACCTGGCCATGAAGCCGCGCGGCATGGTGCTGGTGACCGGGCCTACCGGCT
CGGGCAAGTCGACCACGCTGGCCGCGATGGTCAACTATCTCAACGAAAACGAGTACGGCCACATCCTCACCGTGGAAGAC
CCGATCGAGTTCGTGCACGAATCGAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGCCCGCACACCCGCAACTTCGCCGC
CGCCCTGCGCTCGGCGCTGCGGGAGGATCCCGACGCGATCCTGGTCGGCGAAATGCGCGACCTGGAAACCATCCGCCTGG
CCATGACCGCCGCCGAGACCGGCCACCTGGTCTTCGGCACGCTGCACACCTCGTCGGCCGCCAAGACCATCGACCGGATC
ATCGACGTGTTCCCGGCCGAGGAGAAGGACATGATCCGCGCCATGCTGTCGGAGTCGCTGCAGGCGGTGATCTCGCAGAC
GCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAGATCATGTTGGGCACTTCCGCCATCCGCAACCTGA
TCCGCGAGGCCAAGGTGGCGCAGATGTATTCGGCGATCCAGACCGGCAACAGCGTCGGCATGCAGACGCTCGACCAGAAC
CTCACCGAACTGGTCCGGCGCGGCACGATCACACCGGCCGAAGCACGCTCGAAGGCCAAGACGCCAGAGAATTTCCCCGG
CTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

78.261

99.424

0.778
  pilT Acinetobacter baumannii D1279779

78.261

99.424

0.778
  pilT Acinetobacter baumannii strain A118

78.261

99.424

0.778
  pilT Pseudomonas aeruginosa PAK

77.101

99.424

0.767
  pilT Pseudomonas stutzeri DSM 10701

75.942

99.424

0.755
  pilT Acinetobacter baylyi ADP1

75.942

99.424

0.755
  pilT Legionella pneumophila strain Lp02

73.156

97.695

0.715
  pilT Legionella pneumophila strain ERS1305867

73.156

97.695

0.715
  pilT Neisseria meningitidis 8013

68.116

99.424

0.677
  pilT Neisseria gonorrhoeae MS11

67.826

99.424

0.674
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

68.047

97.406

0.663
  pilT Vibrio cholerae strain A1552

68.047

97.406

0.663
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.884

99.424

0.516
  pilU Acinetobacter baylyi ADP1

41.329

99.712

0.412
  pilU Vibrio cholerae strain A1552

41.159

99.424

0.409
  pilU Pseudomonas stutzeri DSM 10701

42.09

96.542

0.406