Detailed information NTG0894458

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AAVD18_RS18055
• Genome accession: NZ_CP154893
• Coordinates: 3430027..3431148 (+)
• Length: 373 a.a.
• NCBI ID: WP_345808511.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Fad 11/2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3425027..3436148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAVD18_RS18035 (AAVD18_18035)	-	3425347..3426342 (-)	996	WP_013350915.1	DUF5105 domain-containing protein	-
AAVD18_RS18040 (AAVD18_18040)	-	3426459..3427857 (+)	1399	Protein_3503	YcdB/YcdC domain-containing protein	-
AAVD18_RS18045 (AAVD18_18045)	-	3428059..3429417 (+)	1359	WP_014469699.1	YcdB/YcdC domain-containing protein	-
AAVD18_RS18050 (AAVD18_18050)	-	3429414..3429917 (-)	504	WP_014469700.1	M15 family metallopeptidase	-
AAVD18_RS18055 (AAVD18_18055)	rapF	3430027..3431148 (+)	1122	WP_345808511.1	Rap family tetratricopeptide repeat protein	Regulator
AAVD18_RS18060 (AAVD18_18060)	-	3431262..3432041 (+)	780	WP_013350920.1	glucose 1-dehydrogenase	-
AAVD18_RS18065 (AAVD18_18065)	-	3432125..3433804 (+)	1680	WP_345808512.1	alpha-glucosidase	-
AAVD18_RS18070 (AAVD18_18070)	-	3433789..3434283 (-)	495	WP_013350922.1	DUF4188 domain-containing protein	-
AAVD18_RS18075 (AAVD18_18075)	-	3434284..3434829 (-)	546	WP_013350923.1	PadR family transcriptional regulator	-
AAVD18_RS18080 (AAVD18_18080)	-	3435038..3435997 (+)	960	WP_013350924.1	metal ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44347.50 Da
• Isoelectric Point: 5.0800

>NTDB_id=894458 AAVD18_RS18055 WP_345808511.1 3430027..3431148(+) (rapF) [Bacillus amyloliquefaciens strain Fad 11/2]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENKDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHEKALEYLECALEHAERLDDHYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFQQVIQAVFSLTHIYFKTERYSDAAASYARGMKSAAEWEDEIYMTKFRLIKELYQGDGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=894458 AAVD18_RS18055 WP_345808511.1 3430027..3431148(+) (rapF) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGAAATCCAAGATTCCATCTGAAGAAGTAGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATAAGGATTTATTATTGTATTTTT
CATTGATGGAATTTAGGCATCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAACGGGCTGAGGAAAAACTAGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAAGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGTAACCTGATGGACGCCCAGCAGCATGAAAAAGCGCTGGAATACCTTGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCACTATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTTTGGGTGACTTTTGCAAGGCGGCG
GAAGACTTTGAACGAGCGGCTGCCGGTTTTGAAGCGCACAGCTTCCAGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAGATACAGTGACGCCGCCGCCAGCTATGCGCGGGGCATGAAAAGCGCGGCGGAGTGGGAAG
ACGAGATCTATATGACAAAATTCCGTCTGATTAAGGAGCTTTATCAGGGTGACGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAGGAGCTGTTGGCCGACACTGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAATTACGCAT
AA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (187-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.318	99.464	0.421
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402