Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | R3J35_RS03525 | Genome accession | NZ_CP136972 |
| Coordinates | 776818..777852 (-) | Length | 344 a.a. |
| NCBI ID | WP_004084948.1 | Uniprot ID | A0A060GZY3 |
| Organism | Xylella fastidiosa subsp. multiplex strain CFBP8173 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 771818..782852
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R3J35_RS03510 (R3J35_03505) | - | 772304..773113 (-) | 810 | WP_021358437.1 | YdiY family protein | - |
| R3J35_RS03515 (R3J35_03510) | - | 773896..774864 (+) | 969 | WP_004084952.1 | YafY family protein | - |
| R3J35_RS03520 (R3J35_03515) | pilU | 775533..776663 (-) | 1131 | WP_004084950.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| R3J35_RS03525 (R3J35_03520) | pilT | 776818..777852 (-) | 1035 | WP_004084948.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| R3J35_RS03530 (R3J35_03525) | - | 778474..778686 (+) | 213 | WP_021358439.1 | hypothetical protein | - |
| R3J35_RS03535 (R3J35_03530) | - | 779071..779898 (+) | 828 | WP_004084945.1 | glycosyltransferase family 2 protein | - |
| R3J35_RS03540 (R3J35_03535) | - | 780528..781352 (-) | 825 | WP_004084943.1 | glycosyltransferase family 2 protein | - |
| R3J35_RS03545 (R3J35_03540) | - | 781349..782128 (-) | 780 | WP_038211354.1 | beta-ketoacyl synthase chain length factor | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38497.20 Da Isoelectric Point: 6.8843
>NTDB_id=893910 R3J35_RS03525 WP_004084948.1 776818..777852(-) (pilT) [Xylella fastidiosa subsp. multiplex strain CFBP8173]
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQSLIYDIMSDKQRRDYEEALETDFSFEIPSLSR
FRVNAFNQERGAGAVFRTIPNKVMTLDELGCLPVFRKLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNAHGHILTIED
PIEFVHTSQKCLINQREVHRDTHDFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLIKRNLITRQQAREYAKDKANF
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQSLIYDIMSDKQRRDYEEALETDFSFEIPSLSR
FRVNAFNQERGAGAVFRTIPNKVMTLDELGCLPVFRKLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNAHGHILTIED
PIEFVHTSQKCLINQREVHRDTHDFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLIKRNLITRQQAREYAKDKANF
Nucleotide
Download Length: 1035 bp
>NTDB_id=893910 R3J35_RS03525 WP_004084948.1 776818..777852(-) (pilT) [Xylella fastidiosa subsp. multiplex strain CFBP8173]
ATGGATATTGCTGAACTGTTAGCGTTTTCAGTCAAAAACAATGCTTCGGACCTGCACCTGTCAGCAGGCCTGCCACCAAT
GATCAGGGTGGACGGCGATGTACGCCGTATCAATATCCCTGCATTTGACCATAAGCAGGTGCAATCGCTAATTTACGACA
TCATGTCGGATAAGCAACGACGCGACTACGAGGAAGCCCTGGAGACGGATTTTTCGTTCGAAATCCCTTCACTCTCCCGC
TTCCGTGTCAATGCATTCAACCAAGAGCGTGGTGCTGGTGCCGTGTTTCGCACCATTCCCAATAAGGTGATGACATTGGA
CGAACTCGGCTGTTTGCCGGTGTTCCGCAAACTCATTGAAGAACCGCAGGGGTTGATTCTGGTGACTGGGCCGACTGGCT
CTGGAAAATCGACCACCCTCGCAGCCATGATCGACCATATCAACAAAAATGCTCACGGGCATATTCTCACGATAGAGGAC
CCGATTGAGTTCGTTCACACCTCACAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGATACTCACGACTTCAACAA
AGCACTCAGCTCAGCACTGCGCGAAGATCCAGACATCATCTTGATTGGAGAATTGCGTGACCTGGAAACGATCCGTCTAG
CACTGACTGCAGCCGAAACTGGCCACTTGGTATTTGGCACCCTGCACACCAATTCAGCAGCGAAAAGTATTAACCGCATC
ATCGACGTGTTTCCCGCTGCTGAAAAACCGATGGTCCGCTCAATGCTTTCCGAATCGCTCTGCGGGATCATCTCACAAAT
GTTGTTGAAAAAAGTTGGTGGTGGACGTACCGCAGCCTGGGAAATTATGGTTGGCACCCCCGCAATCCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCCATCCAAACTGGCCAGCAATATGGCATGCAAACCCTTGACCAGCATTTG
CAGGATCTCATCAAACGCAACCTGATCACACGACAGCAAGCACGTGAATACGCCAAGGATAAAGCGAATTTTTGA
ATGGATATTGCTGAACTGTTAGCGTTTTCAGTCAAAAACAATGCTTCGGACCTGCACCTGTCAGCAGGCCTGCCACCAAT
GATCAGGGTGGACGGCGATGTACGCCGTATCAATATCCCTGCATTTGACCATAAGCAGGTGCAATCGCTAATTTACGACA
TCATGTCGGATAAGCAACGACGCGACTACGAGGAAGCCCTGGAGACGGATTTTTCGTTCGAAATCCCTTCACTCTCCCGC
TTCCGTGTCAATGCATTCAACCAAGAGCGTGGTGCTGGTGCCGTGTTTCGCACCATTCCCAATAAGGTGATGACATTGGA
CGAACTCGGCTGTTTGCCGGTGTTCCGCAAACTCATTGAAGAACCGCAGGGGTTGATTCTGGTGACTGGGCCGACTGGCT
CTGGAAAATCGACCACCCTCGCAGCCATGATCGACCATATCAACAAAAATGCTCACGGGCATATTCTCACGATAGAGGAC
CCGATTGAGTTCGTTCACACCTCACAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGATACTCACGACTTCAACAA
AGCACTCAGCTCAGCACTGCGCGAAGATCCAGACATCATCTTGATTGGAGAATTGCGTGACCTGGAAACGATCCGTCTAG
CACTGACTGCAGCCGAAACTGGCCACTTGGTATTTGGCACCCTGCACACCAATTCAGCAGCGAAAAGTATTAACCGCATC
ATCGACGTGTTTCCCGCTGCTGAAAAACCGATGGTCCGCTCAATGCTTTCCGAATCGCTCTGCGGGATCATCTCACAAAT
GTTGTTGAAAAAAGTTGGTGGTGGACGTACCGCAGCCTGGGAAATTATGGTTGGCACCCCCGCAATCCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCCATCCAAACTGGCCAGCAATATGGCATGCAAACCCTTGACCAGCATTTG
CAGGATCTCATCAAACGCAACCTGATCACACGACAGCAAGCACGTGAATACGCCAAGGATAAAGCGAATTTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
75.872 |
100 |
0.759 |
| pilT | Pseudomonas aeruginosa PAK |
74.709 |
100 |
0.747 |
| pilT | Acinetobacter baumannii D1279779 |
74.419 |
100 |
0.744 |
| pilT | Acinetobacter baylyi ADP1 |
74.419 |
100 |
0.744 |
| pilT | Acinetobacter baumannii strain A118 |
74.419 |
100 |
0.744 |
| pilT | Acinetobacter nosocomialis M2 |
74.419 |
100 |
0.744 |
| pilT | Legionella pneumophila strain Lp02 |
71.221 |
100 |
0.712 |
| pilT | Legionella pneumophila strain ERS1305867 |
71.221 |
100 |
0.712 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
68.06 |
97.384 |
0.663 |
| pilT | Vibrio cholerae strain A1552 |
68.06 |
97.384 |
0.663 |
| pilT | Neisseria gonorrhoeae MS11 |
62.463 |
99.128 |
0.619 |
| pilT | Neisseria meningitidis 8013 |
62.17 |
99.128 |
0.616 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.986 |
100 |
0.491 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.698 |
100 |
0.407 |
| pilU | Vibrio cholerae strain A1552 |
39.826 |
100 |
0.398 |
| pilU | Acinetobacter baylyi ADP1 |
39.595 |
100 |
0.398 |