Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | R3J28_RS04610 | Genome accession | NZ_CP136971 |
| Coordinates | 1020739..1021773 (+) | Length | 344 a.a. |
| NCBI ID | WP_004084948.1 | Uniprot ID | A0A060GZY3 |
| Organism | Xylella fastidiosa subsp. multiplex strain Santa29b | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1015739..1026773
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R3J28_RS04590 (R3J28_04580) | - | 1016476..1017255 (+) | 780 | WP_038211354.1 | beta-ketoacyl synthase chain length factor | - |
| R3J28_RS04595 (R3J28_04585) | - | 1017252..1018076 (+) | 825 | WP_004084943.1 | glycosyltransferase family 2 protein | - |
| R3J28_RS04600 (R3J28_04590) | - | 1018693..1019520 (-) | 828 | WP_004084945.1 | glycosyltransferase family 2 protein | - |
| R3J28_RS04605 (R3J28_04595) | - | 1019905..1020117 (-) | 213 | WP_021358439.1 | hypothetical protein | - |
| R3J28_RS04610 (R3J28_04600) | pilT | 1020739..1021773 (+) | 1035 | WP_004084948.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| R3J28_RS04615 (R3J28_04605) | pilU | 1021928..1023058 (+) | 1131 | WP_004084950.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| R3J28_RS04620 (R3J28_04610) | - | 1023727..1024695 (-) | 969 | WP_004084952.1 | YafY family protein | - |
| R3J28_RS04625 (R3J28_04615) | - | 1025478..1026287 (+) | 810 | WP_021358437.1 | YdiY family protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38497.20 Da Isoelectric Point: 6.8843
>NTDB_id=893896 R3J28_RS04610 WP_004084948.1 1020739..1021773(+) (pilT) [Xylella fastidiosa subsp. multiplex strain Santa29b]
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQSLIYDIMSDKQRRDYEEALETDFSFEIPSLSR
FRVNAFNQERGAGAVFRTIPNKVMTLDELGCLPVFRKLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNAHGHILTIED
PIEFVHTSQKCLINQREVHRDTHDFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLIKRNLITRQQAREYAKDKANF
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQSLIYDIMSDKQRRDYEEALETDFSFEIPSLSR
FRVNAFNQERGAGAVFRTIPNKVMTLDELGCLPVFRKLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNAHGHILTIED
PIEFVHTSQKCLINQREVHRDTHDFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLIKRNLITRQQAREYAKDKANF
Nucleotide
Download Length: 1035 bp
>NTDB_id=893896 R3J28_RS04610 WP_004084948.1 1020739..1021773(+) (pilT) [Xylella fastidiosa subsp. multiplex strain Santa29b]
ATGGATATTGCTGAACTGTTAGCGTTTTCAGTCAAAAACAATGCTTCGGACCTGCACCTGTCAGCAGGCCTGCCACCAAT
GATCAGGGTGGACGGCGATGTACGCCGTATCAATATCCCTGCATTTGACCATAAGCAGGTGCAATCGCTAATTTACGACA
TCATGTCGGATAAGCAACGACGCGACTACGAGGAAGCCCTGGAGACGGATTTTTCGTTCGAAATCCCTTCACTCTCCCGC
TTCCGTGTCAATGCATTCAACCAAGAGCGTGGTGCTGGTGCCGTGTTTCGCACCATTCCCAATAAGGTGATGACATTGGA
CGAACTCGGCTGTTTGCCGGTGTTCCGCAAACTCATTGAAGAACCGCAGGGGTTGATTCTGGTGACTGGGCCGACTGGCT
CTGGAAAATCGACCACCCTCGCAGCCATGATCGACCATATCAACAAAAATGCTCACGGGCATATTCTCACGATAGAGGAC
CCGATTGAGTTCGTTCACACCTCACAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGATACTCACGACTTCAACAA
AGCACTCAGCTCAGCACTGCGCGAAGATCCAGACATCATCTTGATTGGAGAATTGCGTGACCTGGAAACGATCCGTCTAG
CACTGACTGCAGCCGAAACTGGCCACTTGGTATTTGGCACCCTGCACACCAATTCAGCAGCGAAAAGTATTAACCGCATC
ATCGACGTGTTTCCCGCTGCTGAAAAACCGATGGTCCGCTCAATGCTTTCCGAATCGCTCTGCGGGATCATCTCACAAAT
GTTGTTGAAAAAAGTTGGTGGTGGACGTACCGCAGCCTGGGAAATTATGGTTGGCACCCCCGCAATCCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCCATCCAAACTGGCCAGCAATATGGCATGCAAACCCTTGACCAGCATTTG
CAGGATCTCATCAAACGCAACCTGATCACACGACAGCAAGCACGTGAATACGCCAAGGATAAAGCGAATTTTTGA
ATGGATATTGCTGAACTGTTAGCGTTTTCAGTCAAAAACAATGCTTCGGACCTGCACCTGTCAGCAGGCCTGCCACCAAT
GATCAGGGTGGACGGCGATGTACGCCGTATCAATATCCCTGCATTTGACCATAAGCAGGTGCAATCGCTAATTTACGACA
TCATGTCGGATAAGCAACGACGCGACTACGAGGAAGCCCTGGAGACGGATTTTTCGTTCGAAATCCCTTCACTCTCCCGC
TTCCGTGTCAATGCATTCAACCAAGAGCGTGGTGCTGGTGCCGTGTTTCGCACCATTCCCAATAAGGTGATGACATTGGA
CGAACTCGGCTGTTTGCCGGTGTTCCGCAAACTCATTGAAGAACCGCAGGGGTTGATTCTGGTGACTGGGCCGACTGGCT
CTGGAAAATCGACCACCCTCGCAGCCATGATCGACCATATCAACAAAAATGCTCACGGGCATATTCTCACGATAGAGGAC
CCGATTGAGTTCGTTCACACCTCACAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGATACTCACGACTTCAACAA
AGCACTCAGCTCAGCACTGCGCGAAGATCCAGACATCATCTTGATTGGAGAATTGCGTGACCTGGAAACGATCCGTCTAG
CACTGACTGCAGCCGAAACTGGCCACTTGGTATTTGGCACCCTGCACACCAATTCAGCAGCGAAAAGTATTAACCGCATC
ATCGACGTGTTTCCCGCTGCTGAAAAACCGATGGTCCGCTCAATGCTTTCCGAATCGCTCTGCGGGATCATCTCACAAAT
GTTGTTGAAAAAAGTTGGTGGTGGACGTACCGCAGCCTGGGAAATTATGGTTGGCACCCCCGCAATCCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCCATCCAAACTGGCCAGCAATATGGCATGCAAACCCTTGACCAGCATTTG
CAGGATCTCATCAAACGCAACCTGATCACACGACAGCAAGCACGTGAATACGCCAAGGATAAAGCGAATTTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
75.872 |
100 |
0.759 |
| pilT | Pseudomonas aeruginosa PAK |
74.709 |
100 |
0.747 |
| pilT | Acinetobacter baumannii D1279779 |
74.419 |
100 |
0.744 |
| pilT | Acinetobacter baylyi ADP1 |
74.419 |
100 |
0.744 |
| pilT | Acinetobacter baumannii strain A118 |
74.419 |
100 |
0.744 |
| pilT | Acinetobacter nosocomialis M2 |
74.419 |
100 |
0.744 |
| pilT | Legionella pneumophila strain Lp02 |
71.221 |
100 |
0.712 |
| pilT | Legionella pneumophila strain ERS1305867 |
71.221 |
100 |
0.712 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
68.06 |
97.384 |
0.663 |
| pilT | Vibrio cholerae strain A1552 |
68.06 |
97.384 |
0.663 |
| pilT | Neisseria gonorrhoeae MS11 |
62.463 |
99.128 |
0.619 |
| pilT | Neisseria meningitidis 8013 |
62.17 |
99.128 |
0.616 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.986 |
100 |
0.491 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.698 |
100 |
0.407 |
| pilU | Vibrio cholerae strain A1552 |
39.826 |
100 |
0.398 |
| pilU | Acinetobacter baylyi ADP1 |
39.595 |
100 |
0.398 |