Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   RYQ61_RS03005 Genome accession   NZ_CP136799
Coordinates   586781..587254 (-) Length   157 a.a.
NCBI ID   WP_117276767.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 581781..592254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS03005 (RYQ61_03005) comR/comR2 586781..587254 (-) 474 WP_117276767.1 sigma-70 family RNA polymerase sigma factor Regulator
  RYQ61_RS03015 (RYQ61_03015) rplQ 588186..588572 (-) 387 WP_003075160.1 50S ribosomal protein L17 -
  RYQ61_RS03020 (RYQ61_03020) - 588584..589522 (-) 939 WP_003077134.1 DNA-directed RNA polymerase subunit alpha -
  RYQ61_RS03025 (RYQ61_03025) rpsK 589567..589950 (-) 384 WP_001118385.1 30S ribosomal protein S11 -
  RYQ61_RS03030 (RYQ61_03030) rpsM 589970..590335 (-) 366 WP_002262317.1 30S ribosomal protein S13 -
  RYQ61_RS03035 (RYQ61_03035) rpmJ 590351..590467 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  RYQ61_RS03040 (RYQ61_03040) infA 590492..590710 (-) 219 WP_001029883.1 translation initiation factor IF-1 -
  RYQ61_RS03045 (RYQ61_03045) - 590826..591464 (-) 639 WP_009569575.1 adenylate kinase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19430.42 Da        Isoelectric Point: 8.5935

>NTDB_id=892712 RYQ61_RS03005 WP_117276767.1 586781..587254(-) (comR/comR2) [Streptococcus intermedius strain XH2169]
MDFKELYEKVRGIVLKCRREYYVHLWDLSDWDQEGMMVLYELVSRHPYLVEEEAHLYVYYKTKFRNHIKDILRKQESQKR
KLDRQVYEEVSEIGYKLSLKGLYLDELVILRDQLKSYQKQLSPAKQEQYERLLADERFKGRQAMLRELRTYLKDYEM

Nucleotide


Download         Length: 474 bp        

>NTDB_id=892712 RYQ61_RS03005 WP_117276767.1 586781..587254(-) (comR/comR2) [Streptococcus intermedius strain XH2169]
ATGGATTTCAAGGAGTTATATGAGAAAGTAAGGGGAATTGTGCTGAAGTGTCGGCGGGAATATTATGTCCATCTGTGGGA
TCTAAGCGATTGGGACCAAGAAGGGATGATGGTCTTGTATGAGTTGGTAAGTCGCCACCCCTATTTAGTAGAGGAAGAAG
CCCATCTCTATGTCTACTATAAGACAAAGTTTCGGAATCACATAAAGGATATTCTGCGCAAACAAGAAAGTCAAAAGCGC
AAACTGGATCGCCAAGTGTATGAAGAGGTAAGTGAGATTGGGTACAAGTTAAGTCTGAAAGGTCTGTATCTAGACGAGTT
GGTAATACTCCGCGATCAATTAAAGTCCTATCAAAAGCAACTGAGTCCCGCCAAGCAAGAGCAGTATGAGCGGTTACTGG
CAGATGAAAGGTTCAAAGGACGCCAAGCGATGCTTCGAGAGTTACGAACCTACTTAAAAGACTATGAGATGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

59.355

98.726

0.586
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

59.355

98.726

0.586
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

55.484

98.726

0.548
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

54.194

98.726

0.535
  comX/comX2 Streptococcus pneumoniae Rx1

53.548

98.726

0.529
  comX/comX1 Streptococcus pneumoniae Rx1

53.548

98.726

0.529
  comX/comX2 Streptococcus pneumoniae D39

53.548

98.726

0.529
  comX/comX1 Streptococcus pneumoniae D39

53.548

98.726

0.529
  comX/comX2 Streptococcus pneumoniae R6

53.548

98.726

0.529
  comX/comX1 Streptococcus pneumoniae R6

53.548

98.726

0.529
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

53.548

98.726

0.529
  comX/comX1 Streptococcus pneumoniae TIGR4

52.903

98.726

0.522
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

52.903

98.726

0.522
  comX/comX2 Streptococcus pneumoniae TIGR4

52.903

98.726

0.522
  comX/sigX Streptococcus mutans UA159

50

98.089

0.49
  comX/sigX Streptococcus suis isolate S10

49.032

98.726

0.484
  comX/sigX Streptococcus suis D9

49.032

98.726

0.484
  comX/sigX Streptococcus suis P1/7

49.032

98.726

0.484
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

43.226

98.726

0.427
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

43.226

98.726

0.427
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

43.226

98.726

0.427
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

43.226

98.726

0.427
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

43.226

98.726

0.427
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

43.226

98.726

0.427
  comX Streptococcus salivarius SK126

43.506

98.089

0.427
  comX/sigX Streptococcus salivarius strain HSISS4

42.857

98.089

0.42
  comX Streptococcus thermophilus LMG 18311

42.857

98.089

0.42
  comX Streptococcus thermophilus LMD-9

42.857

98.089

0.42
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

39.744

99.363

0.395