Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   R1T44_RS02485 Genome accession   NZ_CP136695
Coordinates   556244..557275 (+) Length   343 a.a.
NCBI ID   WP_043333445.1    Uniprot ID   A0AAP4TYL5
Organism   Cobetia amphilecti strain CI.11.F.A3     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 551244..562275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T44_RS02460 (R1T44_02460) metW 551564..552178 (-) 615 WP_213114186.1 methionine biosynthesis protein MetW -
  R1T44_RS02465 (R1T44_02465) - 552171..553364 (-) 1194 WP_213114187.1 homoserine O-acetyltransferase -
  R1T44_RS02470 (R1T44_02470) - 553634..554215 (-) 582 WP_043333437.1 YggT family protein -
  R1T44_RS02475 (R1T44_02475) proC 554365..555207 (-) 843 WP_043333440.1 pyrroline-5-carboxylate reductase -
  R1T44_RS02480 (R1T44_02480) - 555296..556048 (-) 753 WP_288987296.1 YggS family pyridoxal phosphate-dependent enzyme -
  R1T44_RS02485 (R1T44_02485) pilT 556244..557275 (+) 1032 WP_043333445.1 type IV pilus twitching motility protein PilT Machinery gene
  R1T44_RS02490 (R1T44_02490) pilU 557415..558569 (+) 1155 WP_288987299.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  R1T44_RS02495 (R1T44_02495) - 558660..559808 (-) 1149 WP_317292502.1 anhydro-N-acetylmuramic acid kinase -
  R1T44_RS02500 (R1T44_02500) tyrS 559964..561172 (+) 1209 WP_054556461.1 tyrosine--tRNA ligase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37712.34 Da        Isoelectric Point: 6.0550

>NTDB_id=892519 R1T44_RS02485 WP_043333445.1 556244..557275(+) (pilT) [Cobetia amphilecti strain CI.11.F.A3]
MDITELLAFSAKQNASDLHLSAGLPPMIRVDGDVRRINVPSMDDKQVRALIYEIMNDKQRRDFEEFLETDFSFEVPGVSR
FRVNAFHQGRGAGAVFRTIPSEVLTMEDLGLGEAFRKMCMLPRGLILVTGPTGSGKSTTLAAMVDYINENKYDHILTIED
PVEFVHQSKRCLVNQREVHRDTHGFAPALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTTSATKTVDRI
IDVFPGEEKSMVRSMLSESLQGVIAQTLLKKIGGGRVAAHEIMIATPAIRNLIREDKVAQMYSSIQTGGALGMQTLDAAL
TRLLAEGLVTNEDAQAKAKGLLS

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=892519 R1T44_RS02485 WP_043333445.1 556244..557275(+) (pilT) [Cobetia amphilecti strain CI.11.F.A3]
ATGGATATTACCGAACTGCTAGCTTTTTCGGCAAAACAGAACGCGTCGGATCTTCACCTGTCCGCTGGTTTGCCACCGAT
GATTCGTGTCGACGGTGATGTGCGGCGCATCAATGTGCCGTCAATGGATGACAAGCAGGTGCGTGCGCTGATCTACGAGA
TCATGAACGACAAGCAGCGCCGTGACTTCGAGGAATTCCTCGAGACCGATTTCTCCTTCGAGGTGCCGGGCGTATCACGC
TTTCGTGTCAACGCCTTCCATCAGGGGCGCGGCGCGGGGGCCGTCTTCCGTACCATCCCCTCGGAAGTGCTGACGATGGA
GGATCTGGGGCTCGGTGAAGCCTTCCGCAAGATGTGCATGCTGCCGCGCGGCCTGATCCTTGTCACCGGGCCGACCGGCT
CCGGTAAATCCACCACGCTGGCGGCGATGGTCGATTACATCAACGAGAACAAGTACGACCACATCCTCACCATCGAGGAC
CCGGTGGAATTCGTGCACCAGTCCAAGCGGTGTCTGGTCAACCAGCGTGAAGTGCACCGTGATACCCACGGCTTCGCGCC
CGCGCTGCGCTCGGCGCTGCGTGAAGACCCGGATGTCATTCTGGTCGGCGAGCTGCGAGATCTCGAGACCATCCGCCTGG
CGCTGACCGCGGCCGAGACGGGCCACCTGGTGTTCGGCACCCTGCACACCACCTCCGCGACCAAGACCGTCGACCGTATC
ATCGACGTCTTCCCCGGCGAGGAGAAGTCGATGGTGCGCTCGATGCTGTCCGAGTCCCTGCAGGGCGTCATCGCCCAGAC
ACTGCTCAAGAAGATCGGCGGTGGCCGGGTGGCGGCTCACGAGATCATGATCGCGACGCCTGCCATTCGTAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCCTCCATCCAGACCGGTGGCGCCCTGGGCATGCAGACACTGGATGCAGCGCTG
ACGCGTCTGTTGGCGGAAGGGCTGGTGACCAATGAAGATGCTCAGGCGAAAGCCAAGGGCTTGTTGAGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

84.071

98.834

0.831
  pilT Pseudomonas aeruginosa PAK

82.301

98.834

0.813
  pilT Acinetobacter baumannii D1279779

78.466

98.834

0.776
  pilT Acinetobacter baumannii strain A118

78.466

98.834

0.776
  pilT Acinetobacter nosocomialis M2

78.171

98.834

0.773
  pilT Acinetobacter baylyi ADP1

77.876

98.834

0.77
  pilT Legionella pneumophila strain Lp02

72.781

98.542

0.717
  pilT Legionella pneumophila strain ERS1305867

72.781

98.542

0.717
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

70.326

98.251

0.691
  pilT Vibrio cholerae strain A1552

70.326

98.251

0.691
  pilT Neisseria meningitidis 8013

65.689

99.417

0.653
  pilT Neisseria gonorrhoeae MS11

65.396

99.417

0.65
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.327

98.834

0.507
  pilU Pseudomonas stutzeri DSM 10701

42.985

97.668

0.42
  pilU Vibrio cholerae strain A1552

41.194

97.668

0.402
  pilU Acinetobacter baylyi ADP1

39.412

99.125

0.391