Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AABK31_RS20545 Genome accession   NZ_AP027679
Coordinates   4162519..4163151 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain PSS-08-2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4157519..4168151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK31_RS20520 (VEE22_39640) yheS 4157688..4159601 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  AABK31_RS20525 (VEE22_39650) yheT 4159601..4160623 (+) 1023 WP_000057356.1 hydrolase -
  AABK31_RS20530 (VEE22_39660) yheU 4160617..4160835 (+) 219 WP_000907085.1 YheU family protein -
  AABK31_RS20535 (VEE22_39670) prkB 4160889..4161758 (+) 870 WP_001274680.1 phosphoribulokinase -
  AABK31_RS20540 (VEE22_39680) yhfA 4161813..4162217 (-) 405 WP_001148908.1 OsmC family protein -
  AABK31_RS20545 (VEE22_39700) crp 4162519..4163151 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AABK31_RS20550 (VEE22_39710) yhfK 4163202..4165292 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  AABK31_RS20555 (VEE22_39720) argD 4165359..4166579 (-) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AABK31_RS20560 (VEE22_39730) pabA 4166665..4167228 (-) 564 WP_113410552.1 aminodeoxychorismate synthase component 2 -
  AABK31_RS20565 (VEE22_39740) fic 4167260..4167862 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  AABK31_RS20570 (VEE22_39750) yhfG 4167852..4168019 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=89054 AABK31_RS20545 WP_000242755.1 4162519..4163151(+) (crp) [Escherichia coli strain PSS-08-2]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89054 AABK31_RS20545 WP_000242755.1 4162519..4163151(+) (crp) [Escherichia coli strain PSS-08-2]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment