Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   RF679_RS14870 Genome accession   NZ_CP133720
Coordinates   3565133..3566176 (+) Length   347 a.a.
NCBI ID   WP_309481412.1    Uniprot ID   -
Organism   Undibacterium cyanobacteriorum strain 20NA77.5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3560133..3571176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF679_RS14845 (RF679_14845) - 3560665..3561270 (+) 606 WP_309481407.1 hypothetical protein -
  RF679_RS14850 (RF679_14850) - 3561468..3562412 (+) 945 WP_309481408.1 hydrogen peroxide-inducible genes activator -
  RF679_RS14855 (RF679_14855) ubiA 3562509..3563375 (+) 867 WP_309481409.1 4-hydroxybenzoate octaprenyltransferase -
  RF679_RS14860 (RF679_14860) proC 3563384..3564223 (-) 840 WP_309481410.1 pyrroline-5-carboxylate reductase -
  RF679_RS14865 (RF679_14865) - 3564213..3564944 (-) 732 WP_309481411.1 YggS family pyridoxal phosphate-dependent enzyme -
  RF679_RS14870 (RF679_14870) pilT 3565133..3566176 (+) 1044 WP_309481412.1 type IV pilus twitching motility protein PilT Machinery gene
  RF679_RS14875 (RF679_14875) pilU 3566219..3567355 (+) 1137 WP_309481413.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  RF679_RS14880 (RF679_14880) - 3567352..3567846 (+) 495 WP_309481414.1 glutathione peroxidase -
  RF679_RS14885 (RF679_14885) - 3568292..3568660 (+) 369 WP_309481415.1 hypothetical protein -
  RF679_RS14895 (RF679_14895) - 3568826..3569557 (+) 732 WP_373921691.1 ZIP family metal transporter -
  RF679_RS14900 (RF679_14900) - 3569573..3570454 (-) 882 WP_309481417.1 sulfurtransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38006.49 Da        Isoelectric Point: 6.7776

>NTDB_id=876104 RF679_RS14870 WP_309481412.1 3565133..3566176(+) (pilT) [Undibacterium cyanobacteriorum strain 20NA77.5]
MDISELLAFSVKNNASDLHLSSGLPPMIRVHGDVRRINLPPLEHKDVHALIYDIMNDGQRKQYEENLECDFSFAIPGLAR
FRVNAFNQERGAAAVMRTIPSKILSLEQLNAPKCFAEFSLKARGLVLVTGPTGSGKSTTLAGMVNHVNENEYGHILTVED
PIEFVHDSKKCLINQREVGPHTHSFSNALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKEMVRAMLSESLQAVISQTLLKTKDGSGRVAAHEIMVGTPAIRNLIREAKIAQMYSAIQTGSNVGMQTLDQN
LSDLVRRNVISASTARAAAKIPENFPG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=876104 RF679_RS14870 WP_309481412.1 3565133..3566176(+) (pilT) [Undibacterium cyanobacteriorum strain 20NA77.5]
ATGGACATCTCAGAACTTCTCGCATTTTCGGTAAAGAATAACGCATCCGATCTTCATCTCTCTTCCGGTTTGCCTCCGAT
GATTCGCGTACACGGTGATGTTCGCCGTATCAATTTGCCACCGCTCGAGCACAAAGATGTGCATGCCTTGATTTACGACA
TTATGAATGACGGCCAGCGCAAGCAATACGAAGAGAATCTGGAGTGTGACTTTTCCTTCGCGATCCCTGGTCTGGCCCGT
TTCCGTGTTAACGCTTTCAACCAAGAGCGTGGTGCCGCTGCCGTTATGCGTACGATTCCATCCAAGATTCTCAGCCTTGA
GCAGCTGAATGCGCCAAAGTGCTTCGCCGAATTCTCGCTCAAAGCACGCGGCTTAGTGTTAGTGACAGGTCCAACCGGTT
CCGGTAAATCGACCACCTTGGCGGGTATGGTGAACCATGTCAACGAAAACGAGTACGGCCATATCCTGACCGTCGAAGAT
CCTATCGAATTCGTGCACGACTCTAAGAAGTGTCTGATTAACCAACGTGAAGTCGGGCCACATACCCACTCCTTCTCAAA
CGCTTTGCGTTCCGCCTTACGTGAAGATCCTGACGTGATTCTGGTGGGTGAGTTGCGTGACTTAGAGACGATTCGTTTGG
CGTTGACTGCTGCGGAGACCGGCCACTTGGTCTTCGGAACCTTGCATACCTCATCCGCTGCCAAAACGATTGACCGTATT
ATCGACGTCTTCCCAGCCGAAGAAAAAGAGATGGTCCGTGCGATGTTGTCTGAATCTTTACAAGCGGTTATTTCGCAGAC
GCTATTAAAAACCAAAGATGGATCTGGTCGTGTAGCAGCTCATGAAATTATGGTCGGCACACCGGCGATTCGTAACTTGA
TTCGTGAAGCCAAGATTGCGCAAATGTATTCTGCGATCCAAACGGGTAGCAATGTGGGCATGCAAACCCTGGATCAAAAT
CTTTCTGATTTGGTTCGTCGTAATGTGATTTCAGCATCAACAGCACGTGCTGCGGCGAAGATTCCAGAAAACTTCCCGGG
CTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

77.681

99.424

0.772
  pilT Acinetobacter baumannii D1279779

77.681

99.424

0.772
  pilT Acinetobacter baumannii strain A118

77.681

99.424

0.772
  pilT Pseudomonas aeruginosa PAK

76.232

99.424

0.758
  pilT Pseudomonas stutzeri DSM 10701

74.783

99.424

0.744
  pilT Acinetobacter baylyi ADP1

74.203

99.424

0.738
  pilT Legionella pneumophila strain Lp02

74.631

97.695

0.729
  pilT Legionella pneumophila strain ERS1305867

74.631

97.695

0.729
  pilT Neisseria meningitidis 8013

67.826

99.424

0.674
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

69.436

97.118

0.674
  pilT Vibrio cholerae strain A1552

69.436

97.118

0.674
  pilT Neisseria gonorrhoeae MS11

67.536

99.424

0.671
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.725

99.424

0.504
  pilU Acinetobacter baylyi ADP1

41.04

99.712

0.409
  pilU Vibrio cholerae strain A1552

41.194

96.542

0.398
  pilU Pseudomonas stutzeri DSM 10701

40.896

96.542

0.395