Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU22_RS06600 Genome accession   NZ_CP148578
Coordinates   1307215..1307844 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1322HEC0005     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1302215..1312844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU22_RS06585 (WHU22_06585) helD 1302457..1304511 (-) 2055 WP_021577221.1 DNA helicase IV -
  WHU22_RS06590 (WHU22_06590) yccF 1304634..1305080 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WHU22_RS06595 (WHU22_06595) yccS 1305090..1307252 (+) 2163 WP_000323868.1 YccS family putative transporter -
  WHU22_RS06600 (WHU22_06600) sxy/tfoX 1307215..1307844 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU22_RS06605 (WHU22_06605) sulA 1308063..1308572 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  WHU22_RS06610 (WHU22_06610) ompA 1308929..1309981 (+) 1053 WP_021577220.1 porin OmpA -
  WHU22_RS06615 (WHU22_06615) matP 1310057..1310509 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  WHU22_RS06620 (WHU22_06620) ycbZ 1310695..1312455 (+) 1761 WP_021577219.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=873082 WHU22_RS06600 WP_000839153.1 1307215..1307844(-) (sxy/tfoX) [Escherichia coli strain Z1322HEC0005]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=873082 WHU22_RS06600 WP_000839153.1 1307215..1307844(-) (sxy/tfoX) [Escherichia coli strain Z1322HEC0005]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1