Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RCG17_RS06030 Genome accession   NZ_CP133268
Coordinates   1152755..1153510 (-) Length   251 a.a.
NCBI ID   WP_308174338.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-12     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1147755..1158510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG17_RS06005 (RCG17_06005) - 1148197..1148775 (-) 579 WP_308174333.1 Maf family protein -
  RCG17_RS06010 (RCG17_06010) - 1148995..1150068 (-) 1074 WP_308174334.1 hypothetical protein -
  RCG17_RS06015 (RCG17_06015) - 1150196..1151077 (-) 882 WP_308174335.1 hypothetical protein -
  RCG17_RS06020 (RCG17_06020) - 1151074..1151739 (-) 666 WP_308174336.1 hypothetical protein -
  RCG17_RS06025 (RCG17_06025) pilM 1151743..1152729 (-) 987 WP_308174337.1 pilus assembly protein PilM -
  RCG17_RS06030 (RCG17_06030) comC 1152755..1153510 (-) 756 WP_308174338.1 prepilin peptidase Machinery gene
  RCG17_RS06035 (RCG17_06035) - 1153516..1154028 (-) 513 WP_308174339.1 type II secretion system protein -
  RCG17_RS06040 (RCG17_06040) - 1154174..1155388 (-) 1215 WP_308174340.1 type II secretion system F family protein -
  RCG17_RS06045 (RCG17_06045) pilT 1155390..1156430 (-) 1041 WP_308174341.1 type IV pilus twitching motility protein PilT Machinery gene
  RCG17_RS06050 (RCG17_06050) - 1156444..1158102 (-) 1659 WP_308174342.1 GspE/PulE family protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28107.23 Da        Isoelectric Point: 9.8023

>NTDB_id=873081 RCG17_RS06030 WP_308174338.1 1152755..1153510(-) (comC) [Neobacillus sp. PS3-12]
MNTLLFLLLFIYGITFGSFFNVVGLRIPLNQSIVKPRSACPSCGRYLSAFDLIPVFSYMFLRGKCRVCKARISPVYPVME
LLTGLLFVLAAYRIGWIGELFIALTLVSLLMIITVSDISYMIIPDKILLFFAGLFLLERIFWPLDPWWDSLLGATIGFLL
LLLIAVISKGGMGGGDIKLFALIGFVLGTKLFLLAFFLSTLYGALFGVFGLLTKLIKRRQPIPFGPYIVAGALTAYFWGE
QLIELYLRLLQ

Nucleotide


Download         Length: 756 bp        

>NTDB_id=873081 RCG17_RS06030 WP_308174338.1 1152755..1153510(-) (comC) [Neobacillus sp. PS3-12]
ATGAATACCTTACTTTTTTTATTATTATTTATTTACGGAATAACCTTTGGCTCTTTCTTCAACGTCGTCGGTCTTCGCAT
ACCGTTAAACCAATCGATTGTCAAGCCGAGGTCGGCATGCCCAAGCTGCGGACGTTATTTATCAGCTTTTGATCTAATTC
CTGTCTTTTCATATATGTTTTTAAGGGGGAAATGCCGCGTCTGTAAGGCCCGGATTTCTCCTGTTTATCCGGTTATGGAG
CTGTTAACAGGCCTATTGTTTGTTTTGGCAGCATATCGAATTGGTTGGATAGGAGAACTGTTTATTGCCTTGACATTGGT
TTCCTTGTTGATGATCATTACTGTTTCTGATATATCTTATATGATAATCCCTGATAAAATATTGCTTTTCTTTGCAGGTC
TTTTTTTATTGGAACGCATTTTTTGGCCACTTGACCCGTGGTGGGACAGCCTGCTTGGGGCCACGATAGGGTTTTTGCTT
TTGCTATTGATAGCGGTTATCAGTAAGGGTGGAATGGGCGGCGGCGATATTAAATTATTTGCCCTCATCGGTTTTGTTTT
AGGTACAAAATTATTTTTGCTGGCTTTTTTTCTCTCAACATTATATGGTGCCTTGTTTGGGGTATTTGGGCTTCTTACAA
AGTTGATAAAACGAAGGCAGCCCATTCCGTTCGGACCATATATTGTTGCCGGTGCGCTTACAGCCTATTTCTGGGGAGAA
CAATTAATTGAGCTTTATTTGCGTCTTCTCCAGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-93)

Type IV leader peptidase family (Peptidase_A24)

(105-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

50

96.414

0.482
  pilD Acinetobacter baumannii D1279779

33.577

100

0.367
  pilD Acinetobacter nosocomialis M2

33.212

100

0.363