Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   WHU21_RS10020 Genome accession   NZ_CP148378
Coordinates   2039251..2040231 (+) Length   326 a.a.
NCBI ID   WP_001467825.1    Uniprot ID   -
Organism   Escherichia coli strain Z1323HEC0067     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2034251..2045231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU21_RS09990 (WHU21_09990) yggM 2034852..2035859 (+) 1008 WP_000745230.1 DUF1202 family protein -
  WHU21_RS09995 (WHU21_09995) hemW 2035928..2037064 (-) 1137 WP_000239949.1 radical SAM family heme chaperone HemW -
  WHU21_RS10000 (WHU21_10000) rdgB 2037057..2037650 (-) 594 WP_001174738.1 XTP/dITP diphosphatase -
  WHU21_RS10005 (WHU21_10005) yggU 2037658..2037948 (-) 291 WP_001277222.1 DUF167 family protein YggU -
  WHU21_RS10010 (WHU21_10010) yggT 2037945..2038511 (-) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  WHU21_RS10015 (WHU21_10015) yggS 2038529..2039233 (-) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  WHU21_RS10020 (WHU21_10020) pilT 2039251..2040231 (+) 981 WP_001467825.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  WHU21_RS10025 (WHU21_10025) ruvX 2040405..2040821 (-) 417 WP_000017106.1 Holliday junction resolvase RuvX -
  WHU21_RS10030 (WHU21_10030) yqgE 2040821..2041384 (-) 564 WP_001053178.1 YqgE/AlgH family protein -
  WHU21_RS10035 (WHU21_10035) gshB 2041493..2042443 (-) 951 WP_000593256.1 glutathione synthase -
  WHU21_RS10040 (WHU21_10040) rsmE 2042456..2043187 (-) 732 WP_001222509.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  WHU21_RS10045 (WHU21_10045) endA 2043267..2043974 (-) 708 WP_001305312.1 deoxyribonuclease I -
  WHU21_RS10050 (WHU21_10050) yggI 2044069..2044566 (-) 498 WP_001696137.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36073.30 Da        Isoelectric Point: 5.9975

>NTDB_id=870972 WHU21_RS10020 WP_001467825.1 2039251..2040231(+) (pilT) [Escherichia coli strain Z1323HEC0067]
MNMEEIVTLSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYTSQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQR
VKEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=870972 WHU21_RS10020 WP_001467825.1 2039251..2040231(+) (pilT) [Escherichia coli strain Z1323HEC0067]
ATGAATATGGAAGAAATTGTGACCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGTATTCGCGGGAGAATGGAAGCTGCGCCGTTTGACGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGATTGCGCGGC
AGTGCGTTCGCACAACGGCAAGGTATTTCTCTGGCGTTACGGCTGTTACCTTCGCACTGCCCGCAGCTCGAACAGCTTGG
CGCTCCACCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATACCAGTCAGCGATGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGTATGACTTTCGCATCGGGATTGCG
GGCTGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGATAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGGCATCTGGTGCTGGCGACATTACACACGCGCGGCGCAGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCTGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCAGTGTTGTCACAAAAACTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTACTGATTAACACACCCGCGGTGGGGAATTTGATTCGTGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGAAAGAAGGGCGCTTGTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Neisseria meningitidis 8013

48.476

100

0.488
  pilT Neisseria gonorrhoeae MS11

48.171

100

0.485
  pilT Acinetobacter baylyi ADP1

46.483

100

0.466
  pilT Acinetobacter baumannii D1279779

46.177

100

0.463
  pilT Acinetobacter nosocomialis M2

46.177

100

0.463
  pilT Acinetobacter baumannii strain A118

46.177

100

0.463
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Pseudomonas aeruginosa PAK

45.872

100

0.46
  pilT Legionella pneumophila strain ERS1305867

44.954

100

0.451
  pilT Legionella pneumophila strain Lp02

44.954

100

0.451
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.514

100

0.399
  pilU Pseudomonas stutzeri DSM 10701

37.576

100

0.38
  pilU Acinetobacter baylyi ADP1

36.957

98.773

0.365
  pilB Legionella pneumophila strain ERS1305867

30.89

100

0.362