Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | Q8L25_RS05340 | Genome accession | NZ_CP132339 |
| Coordinates | 1190096..1191139 (-) | Length | 347 a.a. |
| NCBI ID | WP_308923887.1 | Uniprot ID | - |
| Organism | Janthinobacterium sp. J1-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1185096..1196139
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q8L25_RS05325 | glcF | 1185426..1186655 (+) | 1230 | WP_308923884.1 | glycolate oxidase subunit GlcF | - |
| Q8L25_RS05330 | - | 1186652..1188751 (-) | 2100 | WP_308923885.1 | EAL domain-containing protein | - |
| Q8L25_RS05335 | pilU | 1188947..1190092 (-) | 1146 | WP_308923886.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| Q8L25_RS05340 | pilT | 1190096..1191139 (-) | 1044 | WP_308923887.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| Q8L25_RS05345 | - | 1191213..1191914 (+) | 702 | WP_308923888.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| Q8L25_RS05350 | proC | 1191935..1192768 (+) | 834 | WP_308923889.1 | pyrroline-5-carboxylate reductase | - |
| Q8L25_RS05355 | - | 1192967..1193551 (+) | 585 | WP_308923890.1 | LysE family translocator | - |
| Q8L25_RS05360 | - | 1193562..1195028 (+) | 1467 | WP_308923891.1 | PLP-dependent aminotransferase family protein | - |
| Q8L25_RS05365 | - | 1195033..1195758 (-) | 726 | WP_308923892.1 | anti-sigma factor domain-containing protein | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 38143.73 Da Isoelectric Point: 6.7785
>NTDB_id=868257 Q8L25_RS05340 WP_308923887.1 1190096..1191139(-) (pilT) [Janthinobacterium sp. J1-1]
MDISELLAFSVKNKASDLHLSAGLPPMIRVNGDVRRLNVAALEHKEVHGMIYDIMNDGQRKAYEEALECDFSFEIPGLAR
FRVNAYNQERGASAVLRTIPSKVLSLEELNAPRIFGELAMRPRGLVLVTGPTGSGKSTTLAAMVNHVNERLNHHILTIED
PIEFVHEPKKCLINQREVGQHTHSFSNALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKEMVRTMLSESLQAVIAQNLLKTKDGTSRVAAHEIMLTTPAIRNLIREAKVAQMYSAIQTGSNVGMQTLDQC
LTDLVRRGAISAETARSAAKSPENFPG
MDISELLAFSVKNKASDLHLSAGLPPMIRVNGDVRRLNVAALEHKEVHGMIYDIMNDGQRKAYEEALECDFSFEIPGLAR
FRVNAYNQERGASAVLRTIPSKVLSLEELNAPRIFGELAMRPRGLVLVTGPTGSGKSTTLAAMVNHVNERLNHHILTIED
PIEFVHEPKKCLINQREVGQHTHSFSNALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKEMVRTMLSESLQAVIAQNLLKTKDGTSRVAAHEIMLTTPAIRNLIREAKVAQMYSAIQTGSNVGMQTLDQC
LTDLVRRGAISAETARSAAKSPENFPG
Nucleotide
Download Length: 1044 bp
>NTDB_id=868257 Q8L25_RS05340 WP_308923887.1 1190096..1191139(-) (pilT) [Janthinobacterium sp. J1-1]
ATGGACATTTCCGAACTACTCGCATTCTCCGTCAAGAACAAGGCTTCCGACTTGCACCTGTCCGCCGGCCTGCCGCCGAT
GATACGGGTCAATGGCGACGTGCGCCGCCTGAACGTGGCGGCGCTCGAGCACAAGGAAGTGCACGGCATGATCTATGACA
TCATGAACGACGGCCAGCGCAAGGCCTATGAAGAAGCGCTCGAATGCGATTTTTCGTTCGAGATTCCTGGCCTGGCGCGT
TTCCGGGTCAACGCCTACAACCAGGAACGGGGCGCCTCGGCCGTGCTGCGCACGATTCCGTCGAAAGTGCTGAGCCTGGA
AGAGCTGAACGCGCCGCGCATCTTCGGCGAGCTGGCGATGCGCCCGCGCGGTCTGGTGCTGGTGACGGGACCGACCGGTT
CGGGCAAGTCGACCACCCTGGCAGCGATGGTCAATCACGTCAATGAACGGCTGAACCATCACATCCTCACCATCGAAGAT
CCGATCGAATTCGTGCATGAACCAAAGAAATGCCTGATCAACCAGCGCGAAGTGGGCCAGCACACGCATTCGTTCAGCAA
TGCGCTGCGCTCGGCGCTGCGCGAAGATCCGGACGTGATACTGGTCGGTGAATTGCGCGACCTGGAAACCATCCGCCTGG
CACTGACGGCCGCCGAGACGGGCCACCTGGTGTTCGGCACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGAGGAAAAGGAAATGGTACGCACCATGCTGTCCGAATCGCTGCAGGCCGTGATCGCGCAAAA
CCTGCTGAAAACCAAGGATGGCACGAGCCGCGTGGCGGCCCATGAAATCATGCTGACCACGCCGGCGATCCGCAACCTGA
TCCGCGAAGCGAAAGTGGCGCAGATGTATTCGGCGATCCAGACCGGCAGCAACGTCGGCATGCAGACGCTGGACCAGTGC
CTGACGGACCTGGTGCGGCGTGGCGCGATTTCGGCCGAGACGGCGCGTTCGGCCGCCAAGTCGCCTGAAAACTTCCCGGG
ATAA
ATGGACATTTCCGAACTACTCGCATTCTCCGTCAAGAACAAGGCTTCCGACTTGCACCTGTCCGCCGGCCTGCCGCCGAT
GATACGGGTCAATGGCGACGTGCGCCGCCTGAACGTGGCGGCGCTCGAGCACAAGGAAGTGCACGGCATGATCTATGACA
TCATGAACGACGGCCAGCGCAAGGCCTATGAAGAAGCGCTCGAATGCGATTTTTCGTTCGAGATTCCTGGCCTGGCGCGT
TTCCGGGTCAACGCCTACAACCAGGAACGGGGCGCCTCGGCCGTGCTGCGCACGATTCCGTCGAAAGTGCTGAGCCTGGA
AGAGCTGAACGCGCCGCGCATCTTCGGCGAGCTGGCGATGCGCCCGCGCGGTCTGGTGCTGGTGACGGGACCGACCGGTT
CGGGCAAGTCGACCACCCTGGCAGCGATGGTCAATCACGTCAATGAACGGCTGAACCATCACATCCTCACCATCGAAGAT
CCGATCGAATTCGTGCATGAACCAAAGAAATGCCTGATCAACCAGCGCGAAGTGGGCCAGCACACGCATTCGTTCAGCAA
TGCGCTGCGCTCGGCGCTGCGCGAAGATCCGGACGTGATACTGGTCGGTGAATTGCGCGACCTGGAAACCATCCGCCTGG
CACTGACGGCCGCCGAGACGGGCCACCTGGTGTTCGGCACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGAGGAAAAGGAAATGGTACGCACCATGCTGTCCGAATCGCTGCAGGCCGTGATCGCGCAAAA
CCTGCTGAAAACCAAGGATGGCACGAGCCGCGTGGCGGCCCATGAAATCATGCTGACCACGCCGGCGATCCGCAACCTGA
TCCGCGAAGCGAAAGTGGCGCAGATGTATTCGGCGATCCAGACCGGCAGCAACGTCGGCATGCAGACGCTGGACCAGTGC
CTGACGGACCTGGTGCGGCGTGGCGCGATTTCGGCCGAGACGGCGCGTTCGGCCGCCAAGTCGCCTGAAAACTTCCCGGG
ATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter baumannii D1279779 |
75.652 |
99.424 |
0.752 |
| pilT | Acinetobacter baumannii strain A118 |
75.652 |
99.424 |
0.752 |
| pilT | Pseudomonas aeruginosa PAK |
75.652 |
99.424 |
0.752 |
| pilT | Acinetobacter nosocomialis M2 |
75.652 |
99.424 |
0.752 |
| pilT | Acinetobacter baylyi ADP1 |
74.783 |
99.424 |
0.744 |
| pilT | Pseudomonas stutzeri DSM 10701 |
74.203 |
99.424 |
0.738 |
| pilT | Legionella pneumophila strain Lp02 |
72.861 |
97.695 |
0.712 |
| pilT | Legionella pneumophila strain ERS1305867 |
72.861 |
97.695 |
0.712 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
71.217 |
97.118 |
0.692 |
| pilT | Vibrio cholerae strain A1552 |
71.217 |
97.118 |
0.692 |
| pilT | Neisseria meningitidis 8013 |
68.696 |
99.424 |
0.683 |
| pilT | Neisseria gonorrhoeae MS11 |
68.406 |
99.424 |
0.68 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.725 |
99.424 |
0.504 |
| pilU | Acinetobacter baylyi ADP1 |
42.486 |
99.712 |
0.424 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.159 |
99.424 |
0.409 |
| pilU | Vibrio cholerae strain A1552 |
40.87 |
99.424 |
0.406 |