Detailed information NTG0868256

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: Q8L25_RS05335
• Genome accession: NZ_CP132339
• Coordinates: 1188947..1190092 (-)
• Length: 381 a.a.
• NCBI ID: WP_308923886.1
• Uniprot ID: -
• Organism: Janthinobacterium sp. J1-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1183947..1195092

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q8L25_RS05320	glcE	1184328..1185398 (+)	1071	WP_308923883.1	glycolate oxidase subunit GlcE	-
Q8L25_RS05325	glcF	1185426..1186655 (+)	1230	WP_308923884.1	glycolate oxidase subunit GlcF	-
Q8L25_RS05330	-	1186652..1188751 (-)	2100	WP_308923885.1	EAL domain-containing protein	-
Q8L25_RS05335	pilU	1188947..1190092 (-)	1146	WP_308923886.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
Q8L25_RS05340	pilT	1190096..1191139 (-)	1044	WP_308923887.1	type IV pilus twitching motility protein PilT	Machinery gene
Q8L25_RS05345	-	1191213..1191914 (+)	702	WP_308923888.1	YggS family pyridoxal phosphate-dependent enzyme	-
Q8L25_RS05350	proC	1191935..1192768 (+)	834	WP_308923889.1	pyrroline-5-carboxylate reductase	-
Q8L25_RS05355	-	1192967..1193551 (+)	585	WP_308923890.1	LysE family translocator	-
Q8L25_RS05360	-	1193562..1195028 (+)	1467	WP_308923891.1	PLP-dependent aminotransferase family protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 41073.01 Da
• Isoelectric Point: 6.6907

>NTDB_id=868256 Q8L25_RS05335 WP_308923886.1 1188947..1190092(-) (pilU) [Janthinobacterium sp. J1-1]
MTLSDNTGTIHALLAQMRARGGSDLFITAGFPPAIKLDGKLTPLSSTPLDAAQAAGHVRALMNDKQVQSFEASNEANFAI
SPEGLGRFRVSAFVQLGQAGMVLRTINTAIPELGKLGLPAILQDVVMSKRGLVIMVGATGCGKSTTLAAMVGHRNANSHG
HIITIEDPVEFIHPHGNCIVTQREVGVDTEDWGTALKNTLRQAPDVIQIGEIRDRETMDHAIAFAETGHLCLATLHANNA
NQALDRIINFFPEERRQQLLMDLSLNLKGLISQRLVPNKDGGGRKVAMEILLNSPLMSDLIFKGQVHEIKELMKKSRELG
MQTFDQALFDLHEADQISYEDALRNADSVNDLRLSIKLNGKAAHARGAGDTSTGGSSLGLL

Nucleotide

• Length: 1146 bp

>NTDB_id=868256 Q8L25_RS05335 WP_308923886.1 1188947..1190092(-) (pilU) [Janthinobacterium sp. J1-1]
ATGACACTCAGCGACAATACCGGCACCATCCACGCGCTGCTGGCGCAGATGCGCGCACGCGGCGGCTCGGACCTGTTCAT
TACGGCCGGTTTTCCGCCGGCCATCAAGCTCGACGGCAAGCTGACGCCGCTGTCATCGACGCCGCTCGACGCGGCGCAAG
CGGCCGGCCATGTGCGCGCGCTGATGAACGACAAGCAGGTGCAAAGCTTTGAAGCGAGCAACGAAGCGAACTTCGCCATC
AGCCCCGAGGGCCTGGGGCGCTTTCGCGTCTCGGCCTTCGTACAGCTGGGCCAGGCGGGCATGGTGCTGCGCACGATCAA
TACCGCGATACCCGAGCTGGGCAAGCTGGGCCTGCCCGCCATTTTGCAGGACGTGGTGATGAGCAAGCGCGGCCTGGTGA
TCATGGTGGGCGCCACCGGCTGCGGCAAGTCGACCACCCTGGCGGCCATGGTGGGACACCGCAACGCCAACAGCCACGGC
CATATCATCACCATCGAAGATCCGGTGGAATTCATCCATCCGCACGGCAACTGCATCGTCACCCAGCGCGAAGTGGGGGT
CGATACGGAGGACTGGGGCACGGCCCTGAAAAACACCTTGCGCCAGGCGCCCGACGTGATCCAGATCGGCGAAATCCGCG
ACCGCGAAACCATGGATCACGCGATCGCGTTTGCCGAAACAGGCCATCTGTGCCTGGCCACCCTGCACGCCAACAACGCC
AACCAGGCGCTGGACCGCATCATCAATTTCTTTCCCGAAGAGCGGCGCCAGCAACTGCTGATGGATTTGTCGCTGAACCT
GAAGGGCCTGATCTCGCAGCGGCTGGTGCCGAACAAGGATGGCGGCGGGCGCAAGGTGGCGATGGAGATCCTGCTCAACT
CGCCGTTGATGAGCGACCTGATCTTCAAGGGCCAGGTGCACGAGATCAAGGAGCTGATGAAAAAATCGCGCGAGCTGGGC
ATGCAGACCTTCGACCAGGCCCTGTTCGACCTGCACGAAGCAGACCAGATCAGCTATGAAGACGCCTTGCGCAATGCCGA
TTCCGTCAATGACTTGCGGCTGTCCATCAAGCTCAACGGCAAGGCGGCGCATGCGCGCGGAGCGGGCGACACCAGCACGG
GCGGCAGTTCCCTGGGACTGCTCTAG

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (40-277)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	64.162	90.814	0.583
pilU	Acinetobacter baylyi ADP1	59.829	92.126	0.551
pilU	Vibrio cholerae strain A1552	56.012	89.501	0.501
pilT	Pseudomonas aeruginosa PAK	41.543	88.451	0.367
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.813	85.827	0.367