Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   Q7W82_RS16790 Genome accession   NZ_CP131914
Coordinates   3863748..3864785 (-) Length   345 a.a.
NCBI ID   WP_010344138.1    Uniprot ID   A0A0J6G068
Organism   Xanthomonas indica strain PPL560     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3858748..3869785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W82_RS16775 (Q7W82_16755) - 3859565..3861064 (-) 1500 WP_242159424.1 diguanylate cyclase -
  Q7W82_RS16780 (Q7W82_16760) - 3861061..3862341 (-) 1281 WP_242159425.1 PQQ-binding-like beta-propeller repeat protein -
  Q7W82_RS16785 (Q7W82_16765) pilU 3862490..3863620 (-) 1131 WP_010344137.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  Q7W82_RS16790 (Q7W82_16770) pilT 3863748..3864785 (-) 1038 WP_010344138.1 type IV pilus twitching motility protein PilT Machinery gene
  Q7W82_RS16795 (Q7W82_16775) - 3864908..3865564 (+) 657 WP_242159498.1 YggS family pyridoxal phosphate-dependent enzyme -
  Q7W82_RS16800 (Q7W82_16780) - 3865881..3866909 (+) 1029 WP_311195498.1 hypothetical protein -
  Q7W82_RS16805 (Q7W82_16785) proC 3867046..3867891 (+) 846 WP_242159427.1 pyrroline-5-carboxylate reductase -
  Q7W82_RS16815 (Q7W82_16795) - 3868049..3868501 (+) 453 WP_242159428.1 DUF4426 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38578.22 Da        Isoelectric Point: 6.6653

>NTDB_id=866124 Q7W82_RS16790 WP_010344138.1 3863748..3864785(-) (pilT) [Xanthomonas indica strain PPL560]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQNGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRLFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=866124 Q7W82_RS16790 WP_010344138.1 3863748..3864785(-) (pilT) [Xanthomonas indica strain PPL560]
ATGGATATCGCTGAACTATTGGCGTTCTCGGTCAAGAACAAGGCGTCCGACCTGCACCTGTCCGCGGGCCTGCCGCCGAT
GATCCGGGTCGATGGCGACGTCCGCCGCATCAACATCCCGGCGCTGGACCACAAGCAGGTGCACGCGCTTGTCTACGACA
TCATGTCCGACAAGCAGCGCCGCGACTACGAGGAATTCCTCGAGGTCGACTTCTCCTTCGAGATTCCCAGCCTGGCGCGC
TTCCGCGTCAACGCGTTCAACCAGAATCGCGGCGCCGGCGCGGTGTTCCGCACCATTCCCTCGGAAGTGCTGACCCTGGA
AGACCTGGGCTGTCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGCCTGATCCTGGTCACCGGGCCGACCGGTT
CGGGCAAGTCGACCACGCTGGCCGGCATGATCGACTACATCAACAAGAACGAGTACGGCCACATCCTCACCGTCGAGGAT
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAGGTGCACCGCGACACCCACGGCTTCAACGA
GGCGCTGCGCTCGGCGCTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAGTTGCGCGACCTGGAAACCATTCGCCTGG
CGCTGACCGCGGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCCGCCGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGCTGCGCGCGGTGATCTCGCAGGC
GCTGCTGAAGAAGGTCGGCGGCGGCCGCACCGCGGCCTGGGAGATCATGGTCGGCACCCCCGCCATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCGGCGATCCAGACCGGCCAGCAGAACGGCATGCAGACCCTGGACCAGCACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACCCGCAACCAGGCCCGCGAGTACGCCAAGGACAAGCGGTTGTTCGAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6G068

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.233

99.71

0.8
  pilT Acinetobacter baumannii D1279779

80.233

99.71

0.8
  pilT Acinetobacter baumannii strain A118

80.233

99.71

0.8
  pilT Pseudomonas stutzeri DSM 10701

79.07

99.71

0.788
  pilT Acinetobacter baylyi ADP1

78.488

99.71

0.783
  pilT Pseudomonas aeruginosa PAK

79.351

98.261

0.78
  pilT Legionella pneumophila strain Lp02

75.291

99.71

0.751
  pilT Legionella pneumophila strain ERS1305867

75.291

99.71

0.751
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Vibrio cholerae strain A1552

40.23

100

0.406
  pilU Pseudomonas stutzeri DSM 10701

40.708

98.261

0.4
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397