Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   Q7W82_RS16785 Genome accession   NZ_CP131914
Coordinates   3862490..3863620 (-) Length   376 a.a.
NCBI ID   WP_010344137.1    Uniprot ID   -
Organism   Xanthomonas indica strain PPL560     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3857490..3868620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W82_RS16765 (Q7W82_16745) - 3857815..3858489 (-) 675 WP_353949522.1 YitT family protein -
  Q7W82_RS16770 (Q7W82_16750) - 3858687..3859283 (-) 597 WP_242159423.1 MFS transporter permease -
  Q7W82_RS16775 (Q7W82_16755) - 3859565..3861064 (-) 1500 WP_242159424.1 diguanylate cyclase -
  Q7W82_RS16780 (Q7W82_16760) - 3861061..3862341 (-) 1281 WP_242159425.1 PQQ-binding-like beta-propeller repeat protein -
  Q7W82_RS16785 (Q7W82_16765) pilU 3862490..3863620 (-) 1131 WP_010344137.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  Q7W82_RS16790 (Q7W82_16770) pilT 3863748..3864785 (-) 1038 WP_010344138.1 type IV pilus twitching motility protein PilT Machinery gene
  Q7W82_RS16795 (Q7W82_16775) - 3864908..3865564 (+) 657 WP_242159498.1 YggS family pyridoxal phosphate-dependent enzyme -
  Q7W82_RS16800 (Q7W82_16780) - 3865881..3866909 (+) 1029 WP_311195498.1 hypothetical protein -
  Q7W82_RS16805 (Q7W82_16785) proC 3867046..3867891 (+) 846 WP_242159427.1 pyrroline-5-carboxylate reductase -
  Q7W82_RS16815 (Q7W82_16795) - 3868049..3868501 (+) 453 WP_242159428.1 DUF4426 domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41906.19 Da        Isoelectric Point: 6.8811

>NTDB_id=866123 Q7W82_RS16785 WP_010344137.1 3862490..3863620(-) (pilU) [Xanthomonas indica strain PPL560]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVHGKITPITQTPLTPQQSRDLVLNVMTPAQREEFEKTHECNFAIGVAG
VGRFRVSCFYQRNQVGMVLRRIETRIPSVDELNLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAISFAETGHLVLCTLHANNANQAM
DRVINFFPEDRRSQLLMDLSLNLRGVVAQQLIPTPDGKGRRVAMEIMLGTPLVQDYIREGEIHKLKDVMKESTNLGMKTF
DQSLFELYQAGEISYEDALRHADSQNEVRLRIKLAQGGDARTLAQGLDGVEIAEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=866123 Q7W82_RS16785 WP_010344137.1 3862490..3863620(-) (pilU) [Xanthomonas indica strain PPL560]
ATGAGCACCATCGACTTCACCTCCTTCCTGAAACTGATGGCGCACCAGAAGGCGTCGGACCTGTTCATCACCTCGGGCAT
GCCGCCGGCGATCAAGGTGCACGGCAAGATCACCCCGATCACGCAGACGCCGCTGACGCCGCAGCAGAGCCGCGACCTGG
TGCTGAACGTGATGACGCCGGCGCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCAATTTCGCCATCGGCGTGGCCGGG
GTCGGGCGCTTCCGCGTCAGCTGCTTCTACCAGCGCAACCAGGTCGGCATGGTGCTGCGCCGGATCGAGACGCGCATTCC
CAGCGTGGACGAGCTGAACCTGCCGCCGGTGATCAAGACCCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGCACCGGCAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGTAACCAGAATTCCACCGGGCACATCATCACC
ATCGAGGACCCGATCGAGTTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
CTGGGAGAACGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAGGGCA
TGGACCACGCCATCTCCTTCGCCGAGACCGGCCACCTGGTGCTGTGCACCCTGCACGCCAACAACGCCAACCAGGCGATG
GACCGCGTGATCAACTTCTTCCCCGAAGACCGCCGCAGCCAGCTGCTGATGGACCTGTCGCTGAACCTGCGCGGGGTGGT
CGCGCAGCAGCTGATCCCGACCCCGGACGGCAAGGGTCGCCGCGTGGCGATGGAGATCATGCTCGGCACGCCGCTGGTGC
AGGACTACATCCGCGAGGGCGAAATCCACAAGCTCAAGGACGTGATGAAGGAGTCCACCAACCTGGGCATGAAGACCTTC
GACCAGAGCCTGTTCGAGCTGTACCAGGCCGGCGAGATCAGCTACGAGGATGCGCTGCGCCACGCCGATTCGCAGAACGA
GGTGCGCCTGCGCATCAAGCTGGCCCAGGGCGGCGACGCACGCACCCTGGCGCAGGGCCTGGACGGGGTCGAGATCGCCG
AGGTGCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(118-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

66.485

97.606

0.649
  pilU Acinetobacter baylyi ADP1

63.585

94.947

0.604
  pilU Vibrio cholerae strain A1552

53.09

94.681

0.503
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42

93.085

0.391
  pilT Pseudomonas aeruginosa PAK

41.003

90.16

0.37
  pilT Acinetobacter baumannii strain A118

40.407

91.489

0.37
  pilT Acinetobacter nosocomialis M2

40.407

91.489

0.37
  pilT Acinetobacter baumannii D1279779

40.407

91.489

0.37
  pilT Legionella pneumophila strain ERS1305867

40.597

89.096

0.362
  pilT Legionella pneumophila strain Lp02

40.597

89.096

0.362