Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q7653_RS09420 Genome accession   NZ_CP131616
Coordinates   1792788..1793204 (+) Length   138 a.a.
NCBI ID   WP_341948288.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020C08-294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1787788..1798204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7653_RS09395 (Q7653_09500) - 1788611..1790062 (-) 1452 WP_033909671.1 spermidine synthase -
  Q7653_RS09400 (Q7653_09505) - 1790085..1790705 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  Q7653_RS09405 (Q7653_09510) - 1790904..1791280 (-) 377 Protein_1830 transposase -
  Q7653_RS09410 (Q7653_09515) - 1791589..1791714 (-) 126 Protein_1831 IS110 family transposase -
  Q7653_RS09415 (Q7653_09520) - 1792259..1792693 (+) 435 Protein_1832 pilin -
  Q7653_RS09420 (Q7653_09525) pilE 1792788..1793204 (+) 417 WP_341948288.1 pilin Machinery gene
  Q7653_RS09425 (Q7653_09530) lpxC 1793698..1794621 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q7653_RS09430 (Q7653_09535) - 1794767..1795149 (+) 383 Protein_1835 pilin -
  Q7653_RS09435 (Q7653_09540) pilE 1796129..1796632 (+) 504 WP_341948289.1 pilin Machinery gene
  Q7653_RS09440 (Q7653_09545) - 1797045..1797893 (+) 849 WP_341948329.1 opacity family porin -
  Q7653_RS09445 (Q7653_09550) - 1797907..1798056 (+) 150 WP_192274826.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14881.68 Da        Isoelectric Point: 9.5038

>NTDB_id=862812 Q7653_RS09420 WP_341948288.1 1792788..1793204(+) (pilE) [Neisseria gonorrhoeae strain 2020C08-294]
MPTRLDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPSDNSAAGVASSPSDIKGKYVKSVTVTNGVVTAKMLSSGVNKEI
QGKRLSLWARRENGSVKWFCGQPVTRDAGAVTDVADTNEKIDTKHLPSTCRDKASDAT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=862812 Q7653_RS09420 WP_341948288.1 1792788..1793204(+) (pilE) [Neisseria gonorrhoeae strain 2020C08-294]
GTGCCGACAAGGCTGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAATATTACCTGAATCACGGCAAATGGCCATCCGACAATAGTGCCGCCGGCGTGGCATCCTCCCCCTCCGACATCAAAG
GCAAATATGTTAAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCAAAATGCTTTCAAGCGGCGTAAACAAAGAAATC
CAAGGCAAAAGACTCTCCCTGTGGGCCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CGCCGGCGCCGTTACCGACGTTGCCGACACCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAGG
CATCTGATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

74.82

100

0.754
  pilE Neisseria gonorrhoeae strain FA1090

68.382

98.551

0.674