Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q7653_RS09435 Genome accession   NZ_CP131616
Coordinates   1796129..1796632 (+) Length   167 a.a.
NCBI ID   WP_341948289.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020C08-294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1791129..1801632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7653_RS09410 (Q7653_09515) - 1791589..1791714 (-) 126 Protein_1831 IS110 family transposase -
  Q7653_RS09415 (Q7653_09520) - 1792259..1792693 (+) 435 Protein_1832 pilin -
  Q7653_RS09420 (Q7653_09525) pilE 1792788..1793204 (+) 417 WP_341948288.1 pilin Machinery gene
  Q7653_RS09425 (Q7653_09530) lpxC 1793698..1794621 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q7653_RS09430 (Q7653_09535) - 1794767..1795149 (+) 383 Protein_1835 pilin -
  Q7653_RS09435 (Q7653_09540) pilE 1796129..1796632 (+) 504 WP_341948289.1 pilin Machinery gene
  Q7653_RS09440 (Q7653_09545) - 1797045..1797893 (+) 849 WP_341948329.1 opacity family porin -
  Q7653_RS09445 (Q7653_09550) - 1797907..1798056 (+) 150 WP_192274826.1 hypothetical protein -
  Q7653_RS09450 (Q7653_09555) pilA 1798158..1799411 (-) 1254 WP_047920694.1 signal recognition particle-docking protein FtsY Machinery gene
  Q7653_RS09455 (Q7653_09560) msrAB 1799557..1801125 (+) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18032.36 Da        Isoelectric Point: 5.7736

>NTDB_id=862813 Q7653_RS09435 WP_341948289.1 1796129..1796632(+) (pilE) [Neisseria gonorrhoeae strain 2020C08-294]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPENNTSAGVASSPTDI
KGKYVKEALTVKNGVVTATMASSNVNKEIQGKKLSLWARRENGSVKWFCGQPVTRDDAANDDVKDDTNAIDTKHLPSTCR
DKASDAT

Nucleotide


Download         Length: 504 bp        

>NTDB_id=862813 Q7653_RS09435 WP_341948289.1 1796129..1796632(+) (pilE) [Neisseria gonorrhoeae strain 2020C08-294]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCGGCATACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCGAATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCTCCCCCACCGACATC
AAAGGCAAATATGTTAAGGAAGCGTTAACAGTCAAAAACGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAA
AGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTA
CGCGCGACGACGCCGCCAACGACGACGTCAAAGACGACACCAACGCCATCGACACCAAGCACCTGCCGTCAACCTGCCGC
GATAAGGCATCTGATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-160)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

87.5

100

0.88
  pilE Neisseria gonorrhoeae strain FA1090

81.098

98.204

0.796
  comP Acinetobacter baylyi ADP1

38.095

100

0.383
  pilA/pilA1 Eikenella corrodens VA1

35.26

100

0.365
  pilA Ralstonia pseudosolanacearum GMI1000

35.882

100

0.365