Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QRA13_RS03695 Genome accession   NZ_CP128184
Coordinates   850479..851378 (-) Length   299 a.a.
NCBI ID   WP_029325906.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 845479..856378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS03680 (QRA13_03680) xerC 845863..846780 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  QRA13_RS03685 (QRA13_03685) trmFO 846850..848157 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QRA13_RS03690 (QRA13_03690) topA 848222..850297 (-) 2076 WP_007409771.1 type I DNA topoisomerase -
  QRA13_RS03695 (QRA13_03695) dprA 850479..851378 (-) 900 WP_029325906.1 DNA-processing protein DprA Machinery gene
  QRA13_RS03700 (QRA13_03700) sucD 851444..852346 (-) 903 WP_224224259.1 succinate--CoA ligase subunit alpha -
  QRA13_RS03705 (QRA13_03705) sucC 852375..853532 (-) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  QRA13_RS03710 (QRA13_03710) - 853707..853988 (-) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  QRA13_RS03715 (QRA13_03715) - 853985..855688 (-) 1704 WP_224224258.1 glycosyl transferase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32864.07 Da        Isoelectric Point: 8.4593

>NTDB_id=846479 QRA13_RS03695 WP_029325906.1 850479..851378(-) (dprA) [Bacillus velezensis strain YJ0-1 isolate soil]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRRKGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=846479 QRA13_RS03695 WP_029325906.1 850479..851378(-) (dprA) [Bacillus velezensis strain YJ0-1 isolate soil]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCAAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGTTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368