Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRA13_RS04550 Genome accession   NZ_CP128184
Coordinates   1067516..1067800 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1062516..1072800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS04530 (QRA13_04530) ade 1062622..1064355 (-) 1734 WP_224224226.1 adenine deaminase -
  QRA13_RS04535 (QRA13_04535) ktrC 1064504..1065169 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  QRA13_RS04540 (QRA13_04540) - 1065210..1066037 (-) 828 WP_044801364.1 gamma-glutamylcyclotransferase family protein -
  QRA13_RS04545 (QRA13_04545) - 1066039..1067343 (-) 1305 WP_032874761.1 ATP-binding protein -
  QRA13_RS04550 (QRA13_04550) abrB 1067516..1067800 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRA13_RS04555 (QRA13_04555) mreBH 1068072..1069079 (+) 1008 WP_038460721.1 cell shape-determining protein MreBH -
  QRA13_RS04560 (QRA13_04560) - 1069151..1069285 (+) 135 WP_013352107.1 protein YkpC -
  QRA13_RS04565 (QRA13_04565) - 1069386..1070618 (+) 1233 WP_045207302.1 aminopeptidase -
  QRA13_RS04570 (QRA13_04570) - 1070652..1071560 (-) 909 WP_286280638.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=846480 QRA13_RS04550 WP_003154557.1 1067516..1067800(-) (abrB) [Bacillus velezensis strain YJ0-1 isolate soil]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=846480 QRA13_RS04550 WP_003154557.1 1067516..1067800(-) (abrB) [Bacillus velezensis strain YJ0-1 isolate soil]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATCTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543