Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | QQA13_RS12490 | Genome accession | NZ_CP127409 |
| Coordinates | 2687775..2688812 (-) | Length | 345 a.a. |
| NCBI ID | WP_108470865.1 | Uniprot ID | - |
| Organism | Rhodanobacter thiooxydans strain C33 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2682775..2693812
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQA13_RS12470 | ruvX | 2683065..2683517 (+) | 453 | WP_108470861.1 | Holliday junction resolvase RuvX | - |
| QQA13_RS12475 | - | 2683554..2684480 (+) | 927 | WP_108470862.1 | aspartate carbamoyltransferase catalytic subunit | - |
| QQA13_RS12480 | - | 2684570..2686354 (+) | 1785 | WP_234411272.1 | hypothetical protein | - |
| QQA13_RS12485 | pilU | 2686436..2687602 (-) | 1167 | WP_108470864.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| QQA13_RS12490 | pilT | 2687775..2688812 (-) | 1038 | WP_108470865.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| QQA13_RS12495 | proC | 2689182..2690006 (+) | 825 | WP_108470866.1 | pyrroline-5-carboxylate reductase | - |
| QQA13_RS12500 | - | 2690003..2690578 (+) | 576 | WP_108470867.1 | YggT family protein | - |
| QQA13_RS12505 | - | 2690701..2691687 (-) | 987 | WP_108470868.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38545.22 Da Isoelectric Point: 6.8317
>NTDB_id=844174 QQA13_RS12490 WP_108470865.1 2687775..2688812(-) (pilT) [Rhodanobacter thiooxydans strain C33]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALEHKQVHSLIYDIMSDKQRRDYEEFYETDFSFEIPGLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPRIFKELIEQPQGLILVTGPTGSGKSTTLAAMVDHINKNEYGHMLTIED
PIEFVHTSQKCLVNQREIHRDTLGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFATVHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQSLLKKVGGGRIAAHEIMVGIPAIRNLIREDKVAQMYSSIQTGQQFGMQTLDQCL
QDLVKRGLVTRQQASSYAKNKDNFK
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALEHKQVHSLIYDIMSDKQRRDYEEFYETDFSFEIPGLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPRIFKELIEQPQGLILVTGPTGSGKSTTLAAMVDHINKNEYGHMLTIED
PIEFVHTSQKCLVNQREIHRDTLGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFATVHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQSLLKKVGGGRIAAHEIMVGIPAIRNLIREDKVAQMYSSIQTGQQFGMQTLDQCL
QDLVKRGLVTRQQASSYAKNKDNFK
Nucleotide
Download Length: 1038 bp
>NTDB_id=844174 QQA13_RS12490 WP_108470865.1 2687775..2688812(-) (pilT) [Rhodanobacter thiooxydans strain C33]
ATGGACATTGCCGAACTGCTTGCCTTCTCGGTGAAGAACAAGGCCTCGGACCTGCACTTGTCCGCCGGGCTGCCGCCGAT
GATCCGCGTCGACGGCGACGTCCGCCGGATCAACATCCCCGCGCTCGAACACAAGCAGGTGCACTCGCTGATCTACGACA
TCATGTCGGACAAGCAGCGGCGCGACTACGAAGAATTCTACGAGACCGACTTCTCGTTCGAGATCCCCGGGTTGGCCCGT
TTCCGCGTCAACGCGTTCAACCAGAACCGCGGCGCCGGCGCGGTGTTCCGCACCATTCCGTCCGAGGTGCTGACGCTGGA
AGACCTCGGCTGCCCGCGCATCTTCAAGGAACTGATCGAGCAGCCGCAGGGACTGATCCTGGTGACCGGCCCGACCGGCT
CGGGCAAGTCAACCACGCTGGCGGCGATGGTCGACCACATCAACAAGAACGAATACGGGCACATGCTCACGATCGAGGAC
CCGATCGAGTTCGTGCACACCTCGCAGAAGTGCCTGGTCAACCAGCGCGAGATCCATCGCGACACGCTGGGCTTCAACGA
GGCGCTGCGCTCGGCGCTGCGCGAGGACCCGGACTACATCCTGGTCGGCGAGTTGCGCGACCTGGAGACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTGTTCGCCACCGTGCACACCAGCTCGGCGGCGAAGACCATCGACCGCATC
ATCGACGTGTTCCCCGCCGGCGAGAAGCCGATGGTGCGATCGATGCTGTCCGAGTCGCTGCGCGCGGTCATCTCGCAGTC
GCTGCTGAAGAAAGTCGGCGGCGGCCGCATCGCGGCGCACGAAATCATGGTCGGCATCCCGGCCATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTACTCGTCGATCCAGACCGGCCAGCAGTTCGGCATGCAGACGCTGGACCAGTGCCTG
CAGGATCTGGTCAAGCGCGGCCTGGTGACGCGGCAGCAGGCTTCGTCGTATGCCAAGAACAAGGACAATTTCAAGTGA
ATGGACATTGCCGAACTGCTTGCCTTCTCGGTGAAGAACAAGGCCTCGGACCTGCACTTGTCCGCCGGGCTGCCGCCGAT
GATCCGCGTCGACGGCGACGTCCGCCGGATCAACATCCCCGCGCTCGAACACAAGCAGGTGCACTCGCTGATCTACGACA
TCATGTCGGACAAGCAGCGGCGCGACTACGAAGAATTCTACGAGACCGACTTCTCGTTCGAGATCCCCGGGTTGGCCCGT
TTCCGCGTCAACGCGTTCAACCAGAACCGCGGCGCCGGCGCGGTGTTCCGCACCATTCCGTCCGAGGTGCTGACGCTGGA
AGACCTCGGCTGCCCGCGCATCTTCAAGGAACTGATCGAGCAGCCGCAGGGACTGATCCTGGTGACCGGCCCGACCGGCT
CGGGCAAGTCAACCACGCTGGCGGCGATGGTCGACCACATCAACAAGAACGAATACGGGCACATGCTCACGATCGAGGAC
CCGATCGAGTTCGTGCACACCTCGCAGAAGTGCCTGGTCAACCAGCGCGAGATCCATCGCGACACGCTGGGCTTCAACGA
GGCGCTGCGCTCGGCGCTGCGCGAGGACCCGGACTACATCCTGGTCGGCGAGTTGCGCGACCTGGAGACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTGTTCGCCACCGTGCACACCAGCTCGGCGGCGAAGACCATCGACCGCATC
ATCGACGTGTTCCCCGCCGGCGAGAAGCCGATGGTGCGATCGATGCTGTCCGAGTCGCTGCGCGCGGTCATCTCGCAGTC
GCTGCTGAAGAAAGTCGGCGGCGGCCGCATCGCGGCGCACGAAATCATGGTCGGCATCCCGGCCATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTACTCGTCGATCCAGACCGGCCAGCAGTTCGGCATGCAGACGCTGGACCAGTGCCTG
CAGGATCTGGTCAAGCGCGGCCTGGTGACGCGGCAGCAGGCTTCGTCGTATGCCAAGAACAAGGACAATTTCAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
78.488 |
99.71 |
0.783 |
| pilT | Pseudomonas aeruginosa PAK |
78.198 |
99.71 |
0.78 |
| pilT | Acinetobacter nosocomialis M2 |
78.198 |
99.71 |
0.78 |
| pilT | Acinetobacter baumannii D1279779 |
78.198 |
99.71 |
0.78 |
| pilT | Acinetobacter baumannii strain A118 |
78.198 |
99.71 |
0.78 |
| pilT | Acinetobacter baylyi ADP1 |
76.744 |
99.71 |
0.765 |
| pilT | Legionella pneumophila strain Lp02 |
74.419 |
99.71 |
0.742 |
| pilT | Legionella pneumophila strain ERS1305867 |
74.419 |
99.71 |
0.742 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
69.345 |
97.391 |
0.675 |
| pilT | Vibrio cholerae strain A1552 |
69.345 |
97.391 |
0.675 |
| pilT | Neisseria meningitidis 8013 |
64.058 |
100 |
0.641 |
| pilT | Neisseria gonorrhoeae MS11 |
63.768 |
100 |
0.638 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.116 |
100 |
0.481 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.595 |
100 |
0.397 |
| pilU | Acinetobacter baylyi ADP1 |
38.905 |
100 |
0.391 |
| pilU | Vibrio cholerae strain A1552 |
38.728 |
100 |
0.388 |