Detailed information NTG0844173

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: QQA13_RS12485
• Genome accession: NZ_CP127409
• Coordinates: 2686436..2687602 (-)
• Length: 388 a.a.
• NCBI ID: WP_108470864.1
• Uniprot ID: -
• Organism: Rhodanobacter thiooxydans strain C33
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2681436..2692602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQA13_RS12460	-	2681577..2682446 (+)	870	WP_108470859.1	energy transducer TonB	-
QQA13_RS12465	-	2682499..2683068 (+)	570	WP_108470860.1	YqgE/AlgH family protein	-
QQA13_RS12470	ruvX	2683065..2683517 (+)	453	WP_108470861.1	Holliday junction resolvase RuvX	-
QQA13_RS12475	-	2683554..2684480 (+)	927	WP_108470862.1	aspartate carbamoyltransferase catalytic subunit	-
QQA13_RS12480	-	2684570..2686354 (+)	1785	WP_234411272.1	hypothetical protein	-
QQA13_RS12485	pilU	2686436..2687602 (-)	1167	WP_108470864.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QQA13_RS12490	pilT	2687775..2688812 (-)	1038	WP_108470865.1	type IV pilus twitching motility protein PilT	Machinery gene
QQA13_RS12495	proC	2689182..2690006 (+)	825	WP_108470866.1	pyrroline-5-carboxylate reductase	-
QQA13_RS12500	-	2690003..2690578 (+)	576	WP_108470867.1	YggT family protein	-
QQA13_RS12505	-	2690701..2691687 (-)	987	WP_108470868.1	hypothetical protein	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 43294.79 Da
• Isoelectric Point: 6.7734

>NTDB_id=844173 QQA13_RS12485 WP_108470864.1 2686436..2687602(-) (pilU) [Rhodanobacter thiooxydans strain C33]
MSDFDFTSFLKLMVHKKASDLFITAGVAPSMKVQGRIVPITQSPLSVQQARDMVLNVMTPGQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPTIEELTLPPVLKQLAMTKRGIIVFVGATGSGKSTSLAAMIGYRNANSTGHIIT
IEDPIEYVHKHEGCIITQREVGIDTDSWDNALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRILHFFPEDRRQQLLMDLSLNLKGIVAQMLIPTPDGKARRVAVEILLGTPLVQDYIRQGEIHKLKEVMKESTLLGMKTF
DQSLVELYHAGEISYEDALRYADSSNEVRLRIKLAQGGDAHTLSQGLDGVELEETRDAQNFGSNFLNR

Nucleotide

• Length: 1167 bp

>NTDB_id=844173 QQA13_RS12485 WP_108470864.1 2686436..2687602(-) (pilU) [Rhodanobacter thiooxydans strain C33]
ATGAGCGACTTTGATTTCACCTCGTTCCTGAAACTGATGGTGCACAAGAAGGCTTCCGACCTGTTCATCACCGCCGGCGT
GGCGCCGTCGATGAAGGTGCAGGGCCGGATCGTGCCGATCACGCAGAGCCCGCTCAGCGTGCAGCAGGCCCGTGACATGG
TGCTCAACGTGATGACGCCGGGCCAGCGCGAGGAATTCGAGAAGACCCACGAGTGCCAGTTCGCGATCTCTGCGCAGGGC
GTGGGCCGTTTCCGCGTGTCGTGCTTCTACCAGCGCAACTGCGTGGGCATGGTGCTGCGCCGGATCGAGTCGAAGATCCC
CACCATCGAGGAGCTGACCCTGCCGCCGGTGCTCAAGCAGCTGGCGATGACCAAGCGCGGCATCATCGTCTTCGTCGGCG
CCACCGGGTCGGGCAAATCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACGCCAATTCCACCGGCCACATCATAACG
ATCGAGGATCCGATCGAGTACGTGCACAAGCACGAAGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
CTGGGACAACGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATTGGCGAGGTGCGCACGCGCGAGGGCA
TGGACCATGCGATCGCGTTTGCCGAAACCGGCCACCTGGTGCTGTGCACGCTGCACGCGAACAATGCGAACCAGGCGATG
GACCGCATCCTGCACTTCTTCCCGGAGGATCGTCGCCAGCAGTTGCTGATGGACCTGTCCCTGAACCTGAAGGGCATCGT
GGCGCAGATGCTGATCCCCACCCCGGACGGCAAGGCGCGCCGGGTGGCGGTGGAGATCCTGCTGGGCACGCCGCTGGTGC
AGGACTATATCCGCCAGGGCGAGATCCACAAGCTGAAGGAAGTGATGAAGGAATCCACCCTGCTCGGCATGAAGACGTTC
GACCAGAGTCTGGTCGAGCTGTACCACGCCGGCGAGATCAGCTACGAGGATGCGCTGCGTTACGCCGACAGCTCCAACGA
AGTGCGCCTGCGCATCAAGCTGGCGCAGGGCGGCGATGCACACACCCTGTCGCAGGGCCTGGACGGCGTCGAGCTGGAGG
AAACCCGCGACGCGCAGAATTTCGGGAGCAACTTCCTGAACCGTTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	66.845	96.392	0.644
pilU	Acinetobacter baylyi ADP1	62.64	91.753	0.575
pilU	Vibrio cholerae strain A1552	52.528	91.753	0.482
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.591	95.876	0.389