Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QP018_RS12440 Genome accession   NZ_CP126975
Coordinates   2627062..2628129 (+) Length   355 a.a.
NCBI ID   WP_013745832.1    Uniprot ID   F4HFK5
Organism   Gallibacterium anatis strain BJF12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2622062..2633129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP018_RS12425 (QP018_12425) - 2622828..2623217 (-) 390 WP_018345719.1 RidA family protein -
  QP018_RS12430 (QP018_12430) argF 2623239..2624240 (-) 1002 WP_285090885.1 ornithine carbamoyltransferase -
  QP018_RS12435 (QP018_12435) mutS 2624268..2626853 (-) 2586 WP_285090887.1 DNA mismatch repair protein MutS -
  QP018_RS12440 (QP018_12440) recA 2627062..2628129 (+) 1068 WP_013745832.1 recombinase RecA Machinery gene
  QP018_RS12445 (QP018_12445) recX 2628287..2628730 (+) 444 WP_018345715.1 recombination regulator RecX -
  QP018_RS12450 (QP018_12450) djlA 2628814..2629686 (+) 873 WP_013745830.1 co-chaperone DjlA -
  QP018_RS12455 (QP018_12455) dusC 2629693..2630637 (+) 945 WP_285090889.1 tRNA dihydrouridine(16) synthase DusC -
  QP018_RS12460 (QP018_12460) yjjG 2630627..2631304 (+) 678 WP_013745828.1 pyrimidine 5'-nucleotidase -
  QP018_RS12465 (QP018_12465) - 2631992..2632963 (+) 972 WP_196247769.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38335.66 Da        Isoelectric Point: 4.7539

>NTDB_id=840955 QP018_RS12440 WP_013745832.1 2627062..2628129(+) (recA) [Gallibacterium anatis strain BJF12]
MTTNNEDKERALAAALGQIEKQFGKGSIMRLGDTQTLDVEAVSTGSLALDVALGIGGLPMGRIVEIFGPESSGKTTLTLS
VIAQAQKEGKTCAFIDAEHALDPIYASKLGVDVQSLLVSQPDNGEQALEICDALVRSGAVDVIIIDSVAALTPKAEIEGD
MGDSHMGLQARLMSQALRKLTGHIKTANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSITDGDEVI
GNETRVKVVKNKVAAPFRQAEFQILYGEGISKNGELIELGVKHKLLNKSGAWYSYNDEKIGQGRTNAMKWLAEHPEVAAE
LERKLREELLSNPEQLLVADDTEKQPEDDALNFGE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=840955 QP018_RS12440 WP_013745832.1 2627062..2628129(+) (recA) [Gallibacterium anatis strain BJF12]
ATGACAACAAACAATGAAGATAAAGAAAGAGCGCTGGCAGCAGCATTAGGGCAAATTGAAAAACAATTTGGTAAAGGTTC
AATTATGCGCCTTGGTGATACACAGACGTTAGATGTGGAAGCGGTTTCTACCGGTTCATTGGCATTAGATGTGGCGTTAG
GTATCGGTGGTTTGCCAATGGGGCGAATCGTTGAGATTTTTGGGCCTGAATCTTCCGGTAAAACCACATTAACTTTATCT
GTGATTGCGCAAGCACAAAAAGAGGGCAAAACCTGTGCCTTTATTGATGCGGAACACGCATTGGATCCTATTTATGCTTC
TAAATTAGGGGTTGATGTACAATCACTTTTAGTTTCGCAACCGGATAACGGCGAACAAGCGTTAGAAATTTGTGATGCGT
TGGTACGCTCCGGTGCGGTTGATGTCATTATCATTGACTCTGTAGCTGCGTTAACTCCTAAAGCTGAAATTGAGGGTGAT
ATGGGAGATTCTCATATGGGGTTACAGGCTCGTTTAATGTCTCAAGCATTGCGTAAACTTACCGGTCATATCAAAACTGC
AAACTGTTTAGTGGTGTTTATTAACCAAATTCGTATGAAAATTGGGGTTATGTTTGGTAATCCTGAAACAACAACCGGTG
GTAATGCCTTAAAATTCTATGCTTCAGTGCGTTTAGATATTCGCCGCACTGGCTCAATTACTGATGGCGATGAAGTAATT
GGTAACGAAACCAGAGTTAAAGTGGTGAAAAATAAAGTTGCCGCGCCATTTAGACAAGCAGAATTCCAAATTCTTTACGG
AGAAGGTATTTCGAAAAACGGTGAATTAATCGAATTGGGCGTGAAACATAAATTGCTTAATAAATCAGGCGCTTGGTATT
CCTACAATGATGAAAAGATTGGTCAAGGTCGTACCAATGCAATGAAGTGGCTTGCCGAACATCCGGAGGTGGCTGCCGAG
TTGGAACGTAAATTACGTGAAGAGTTGCTTTCCAATCCGGAGCAGTTATTAGTTGCGGATGATACAGAAAAACAACCGGA
AGATGACGCATTAAATTTCGGTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4HFK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

74.286

98.592

0.732
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.286

98.592

0.732
  recA Glaesserella parasuis strain SC1401

74.286

98.592

0.732
  recA Pseudomonas stutzeri DSM 10701

73.824

95.775

0.707
  recA Acinetobacter baylyi ADP1

69.186

96.901

0.67
  recA Neisseria gonorrhoeae MS11

73.684

90.986

0.67
  recA Neisseria gonorrhoeae MS11

73.684

90.986

0.67
  recA Neisseria gonorrhoeae strain FA1090

73.684

90.986

0.67
  recA Acinetobacter baumannii D1279779

68.513

96.62

0.662
  recA Ralstonia pseudosolanacearum GMI1000

74.286

88.732

0.659
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

94.085

0.603
  recA Helicobacter pylori strain NCTC11637

61.834

95.211

0.589
  recA Helicobacter pylori 26695

61.834

95.211

0.589
  recA Streptococcus pneumoniae D39

59.249

97.465

0.577
  recA Streptococcus pneumoniae TIGR4

59.249

97.465

0.577
  recA Streptococcus pneumoniae R6

59.249

97.465

0.577
  recA Streptococcus pneumoniae Rx1

59.249

97.465

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

91.831

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.423

0.575
  recA Streptococcus mitis SK321

61.42

91.268

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

61.682

90.423

0.558
  recA Streptococcus mitis NCTC 12261

60.802

91.268

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.394

92.958

0.552
  recA Streptococcus pyogenes NZ131

60

91.549

0.549
  recA Lactococcus lactis subsp. cremoris KW2

59.568

91.268

0.544
  recA Streptococcus mutans UA159

59.077

91.549

0.541