Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QN096_RS01900 Genome accession   NZ_CP126342
Coordinates   381282..382316 (+) Length   344 a.a.
NCBI ID   WP_044403590.1    Uniprot ID   -
Organism   Pseudomonas otitidis strain TL17     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376282..387316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN096_RS01875 (QN096_01875) - 377514..377810 (-) 297 WP_142012827.1 DUF167 domain-containing protein -
  QN096_RS01880 (QN096_01880) - 377810..378403 (-) 594 WP_074967194.1 YggT family protein -
  QN096_RS01885 (QN096_01885) - 378495..379682 (-) 1188 WP_284547668.1 hypothetical protein -
  QN096_RS01890 (QN096_01890) proC 379685..380503 (-) 819 WP_284547669.1 pyrroline-5-carboxylate reductase -
  QN096_RS01895 (QN096_01895) - 380521..381213 (-) 693 WP_142012820.1 YggS family pyridoxal phosphate-dependent enzyme -
  QN096_RS01900 (QN096_01900) pilT 381282..382316 (+) 1035 WP_044403590.1 type IV pilus twitching motility protein PilT Machinery gene
  QN096_RS01905 (QN096_01905) pilU 382425..383570 (+) 1146 WP_044403589.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QN096_RS28050 - 383512..384957 (-) 1446 WP_308725816.1 TIGR03915 family putative DNA repair protein -
  QN096_RS01920 (QN096_01920) - 384957..386168 (-) 1212 WP_069566424.1 putative DNA modification/repair radical SAM protein -
  QN096_RS01925 (QN096_01925) - 386275..386670 (+) 396 WP_074967204.1 TM2 domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37835.60 Da        Isoelectric Point: 6.8360

>NTDB_id=837742 QN096_RS01900 WP_044403590.1 381282..382316(+) (pilT) [Pseudomonas otitidis strain TL17]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPLDHKQVHALIYDIMNDKQRKDYEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLSMEDLGMGEIFKKISDVPRGLVLVTGPTGSGKSTTLAAMLDYLNGTKYHHILTVED
PIEFVHESKKCLINQREVHRDTLGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKAMVRSMLSESLQAVISQTLLKKIGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGGALGMQTLDSCL
KGLVAKGLVSRESAREKAKTPENF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=837742 QN096_RS01900 WP_044403590.1 381282..382316(+) (pilT) [Pseudomonas otitidis strain TL17]
ATGGATATTACTGAGCTGCTTGCGTTCAGCGCCAAGCAGGGCGCTTCGGACCTGCATCTCTCGGCCGGGCTGCCGCCCAT
GATCCGCGTCGACGGCGATGTTCGCCGTATCAACCTGCCCCCCCTGGACCACAAGCAGGTGCACGCGCTGATCTACGACA
TCATGAACGACAAGCAGCGCAAGGATTACGAGGAATTCCTCGAAACCGACTTCTCGTTCGAGGTGCCCGGCGTGGCCCGC
TTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGTTCCGGACCATTCCCTCCAAGGTGCTGTCCATGGA
GGACCTGGGCATGGGCGAGATCTTCAAGAAGATCTCCGACGTGCCGCGCGGCCTGGTGCTGGTCACCGGCCCCACCGGTT
CGGGCAAGTCCACCACCCTGGCGGCGATGCTCGACTACCTCAACGGCACCAAGTACCACCACATCCTGACGGTGGAAGAC
CCGATCGAATTCGTCCACGAGTCGAAGAAGTGCCTGATCAACCAGCGTGAGGTGCACCGCGACACCCTCGGCTTCAACGA
GGCGCTGCGTTCGGCCCTGCGGGAAGACCCGGACATCATCCTGGTGGGCGAGATGCGCGACCTGGAGACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGTCACCTGGTGTTCGGCACCCTGCACACCACCTCCGCCGCCAAGACCATCGACCGGGTG
GTCGACGTGTTCCCGGCCGAGGAAAAGGCGATGGTGCGCTCCATGCTCTCCGAATCCCTGCAGGCGGTCATTTCCCAGAC
CCTGCTGAAGAAGATCGGCGGCGGCAGGGTGGCGGCCCACGAGATCATGATCGGCACCCCCGCCATCCGTAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCCGCCATCCAGACCGGCGGCGCCCTGGGCATGCAGACCCTGGACAGCTGCCTG
AAGGGCCTGGTGGCCAAGGGCCTGGTCAGCCGCGAAAGCGCGCGTGAAAAGGCCAAGACGCCGGAAAACTTCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

94.767

100

0.948
  pilT Pseudomonas stutzeri DSM 10701

93.895

100

0.939
  pilT Acinetobacter baumannii D1279779

86.047

100

0.86
  pilT Acinetobacter baumannii strain A118

86.047

100

0.86
  pilT Acinetobacter nosocomialis M2

85.756

100

0.858
  pilT Acinetobacter baylyi ADP1

83.14

100

0.831
  pilT Legionella pneumophila strain Lp02

76.331

98.256

0.75
  pilT Legionella pneumophila strain ERS1305867

76.331

98.256

0.75
  pilT Neisseria meningitidis 8013

68.406

100

0.686
  pilT Neisseria gonorrhoeae MS11

68.116

100

0.683
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

69.436

97.965

0.68
  pilT Vibrio cholerae strain A1552

69.436

97.965

0.68
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.174

100

0.523
  pilU Acinetobacter baylyi ADP1

39.884

100

0.401
  pilU Vibrio cholerae strain A1552

39.42

100

0.395
  pilU Pseudomonas stutzeri DSM 10701

40

97.384

0.39