Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QN245_RS06715 Genome accession   NZ_CP126170
Coordinates   1640266..1641303 (+) Length   345 a.a.
NCBI ID   WP_160971019.1    Uniprot ID   -
Organism   Xanthomonas rydalmerensis strain DAR34855     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1635266..1646303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN245_RS06685 (QN245_06690) soxR 1635433..1635870 (+) 438 WP_160965470.1 redox-sensitive transcriptional activator SoxR -
  QN245_RS06690 (QN245_06695) - 1636581..1637033 (-) 453 WP_184645712.1 DUF4426 domain-containing protein -
  QN245_RS06700 (QN245_06705) proC 1637174..1638019 (-) 846 WP_184645714.1 pyrroline-5-carboxylate reductase -
  QN245_RS06705 (QN245_06710) - 1638149..1639177 (-) 1029 WP_160971027.1 hypothetical protein -
  QN245_RS06710 (QN245_06715) - 1639494..1640144 (-) 651 WP_317845320.1 YggS family pyridoxal phosphate-dependent enzyme -
  QN245_RS06715 (QN245_06720) pilT 1640266..1641303 (+) 1038 WP_160971019.1 type IV pilus twitching motility protein PilT Machinery gene
  QN245_RS06720 (QN245_06725) pilU 1641422..1642552 (+) 1131 WP_160971017.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QN245_RS06725 (QN245_06730) - 1642710..1643993 (+) 1284 WP_317844891.1 WD40 repeat domain-containing protein -
  QN245_RS06730 (QN245_06735) - 1643990..1645489 (+) 1500 WP_317844892.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38594.22 Da        Isoelectric Point: 6.6653

>NTDB_id=837037 QN245_RS06715 WP_160971019.1 1640266..1641303(+) (pilT) [Xanthomonas rydalmerensis strain DAR34855]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQNGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRLFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=837037 QN245_RS06715 WP_160971019.1 1640266..1641303(+) (pilT) [Xanthomonas rydalmerensis strain DAR34855]
ATGGATATCGCTGAACTATTGGCGTTCTCGGTCAAGAACAAAGCGTCCGACCTGCACCTGTCCGCGGGCCTGCCGCCGAT
GATCCGGGTCGATGGCGACGTCCGCCGCATCAACATCCCGGCGCTGGACCACAAGCAGGTGCACGCGCTGGTCTACGACA
TCATGTCGGACAAGCAGCGCCGCGACTACGAGGAATTCCTCGAGGTCGACTTCTCGTTCGAGATTCCCAGCCTGGCACGC
TTCCGCGTCAACGCGTTCAACCAGAACCGCGGCGCCGGCGCGGTGTTTCGCACCATTCCCTCGGAAGTGCTGACCCTGGA
AGACCTGGGGTGCCCGCCGATCTTCCGCCAGTTGATCGACCAGCCGCAGGGCCTGATCCTGGTCACCGGGCCGACCGGTT
CGGGCAAGTCGACCACGCTCGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAT
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAGGTGCATCGCGACACCCACGGCTTCAACGA
GGCGCTGCGCTCGGCGCTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAGCTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGACCGCGGCCGAGACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCCGCCGGCGAGAAGCCGATGGTGCGTTCGATGCTGTCCGAATCGCTGCGCGCGGTGATCTCGCAGGC
GCTGCTGAAGAAGGTCGGCGGCGGCCGCACCGCAGCCTGGGAGATCATGGTCGGCACCCCCGCCATCCGTAACCTGATCC
GCGAGGACAAGGTCGCGCAGATGTACTCGTCGATCCAGACCGGCCAGCAGAACGGCATGCAGACCCTGGACCAGCACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACCCGCAACCAGGCCCGCGAGTACGCCAAGGACAAGCGGTTGTTCGAGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.942

99.71

0.797
  pilT Acinetobacter baumannii D1279779

79.942

99.71

0.797
  pilT Acinetobacter baumannii strain A118

79.942

99.71

0.797
  pilT Pseudomonas stutzeri DSM 10701

79.36

99.71

0.791
  pilT Acinetobacter baylyi ADP1

78.779

99.71

0.786
  pilT Pseudomonas aeruginosa PAK

79.056

98.261

0.777
  pilT Legionella pneumophila strain Lp02

75.581

99.71

0.754
  pilT Legionella pneumophila strain ERS1305867

75.581

99.71

0.754
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Vibrio cholerae strain A1552

40.23

100

0.406
  pilU Pseudomonas stutzeri DSM 10701

40.708

98.261

0.4
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397