Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   QN245_RS06720 Genome accession   NZ_CP126170
Coordinates   1641422..1642552 (+) Length   376 a.a.
NCBI ID   WP_160971017.1    Uniprot ID   -
Organism   Xanthomonas rydalmerensis strain DAR34855     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1636422..1647552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN245_RS06690 (QN245_06695) - 1636581..1637033 (-) 453 WP_184645712.1 DUF4426 domain-containing protein -
  QN245_RS06700 (QN245_06705) proC 1637174..1638019 (-) 846 WP_184645714.1 pyrroline-5-carboxylate reductase -
  QN245_RS06705 (QN245_06710) - 1638149..1639177 (-) 1029 WP_160971027.1 hypothetical protein -
  QN245_RS06710 (QN245_06715) - 1639494..1640144 (-) 651 WP_317845320.1 YggS family pyridoxal phosphate-dependent enzyme -
  QN245_RS06715 (QN245_06720) pilT 1640266..1641303 (+) 1038 WP_160971019.1 type IV pilus twitching motility protein PilT Machinery gene
  QN245_RS06720 (QN245_06725) pilU 1641422..1642552 (+) 1131 WP_160971017.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QN245_RS06725 (QN245_06730) - 1642710..1643993 (+) 1284 WP_317844891.1 WD40 repeat domain-containing protein -
  QN245_RS06730 (QN245_06735) - 1643990..1645489 (+) 1500 WP_317844892.1 diguanylate cyclase -
  QN245_RS06735 (QN245_06740) - 1645855..1646394 (+) 540 WP_237475476.1 MFS transporter permease -
  QN245_RS06740 (QN245_06745) - 1646528..1647244 (+) 717 WP_184446859.1 YitT family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41956.22 Da        Isoelectric Point: 6.8811

>NTDB_id=837038 QN245_RS06720 WP_160971017.1 1641422..1642552(+) (pilU) [Xanthomonas rydalmerensis strain DAR34855]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAMKVHGKITPITQTPLTPQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPSVDELNLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAISFAETGHLVLCTLHANNANQAM
DRVINFFPEDRRSQLLMDLSLNLRGVVAQQLIPTPDGKGRRVAMEIMLGTPLVQDYIREGEIHKLKDVMKESTNLGMKTF
DQSLFELYQAGEISYEDALRHADSQNEVRLRIKLAQGGDARTLAQGLDGVEIAEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=837038 QN245_RS06720 WP_160971017.1 1641422..1642552(+) (pilU) [Xanthomonas rydalmerensis strain DAR34855]
ATGAGCACCATCGACTTCACCTCCTTCCTGAAACTGATGGCGCACCAGAAGGCGTCGGACCTGTTCATCACCTCGGGCAT
GCCGCCGGCGATGAAGGTGCACGGCAAGATCACCCCGATCACGCAGACGCCGCTGACCCCGCAGCAGAGCCGCGACCTGG
TGCTGAACGTGATGACGCCGTCGCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCAATTTCGCCATCGGCGTGTCAGGC
GTCGGCCGCTTCCGCGTCAGTTGCTTCTACCAGCGCAACCAGGTGGGCATGGTGCTGCGCCGGATCGAGACGCGCATTCC
CAGCGTGGACGAGCTGAATCTGCCGCCGGTGATCAAGACCCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGCACCGGCAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAACTCCACCGGGCACATCATCACC
ATCGAGGACCCGATCGAGTTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
CTGGGAGAACGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAGGGCA
TGGACCACGCCATCTCCTTCGCCGAGACCGGCCACCTGGTGCTGTGCACGCTGCACGCCAACAACGCCAACCAGGCGATG
GACCGCGTGATCAACTTCTTCCCTGAGGACCGCCGCAGCCAGCTGCTGATGGACCTGTCGCTGAACCTGCGCGGCGTGGT
CGCGCAGCAGCTGATCCCGACCCCGGACGGCAAGGGCCGCCGCGTGGCCATGGAGATCATGCTCGGCACGCCGCTGGTGC
AGGACTACATCCGCGAAGGCGAGATCCACAAGCTCAAGGACGTGATGAAGGAGTCCACCAACCTGGGCATGAAGACCTTC
GACCAGAGCCTGTTCGAGTTGTACCAGGCCGGCGAGATCAGCTACGAGGATGCGCTGCGCCACGCCGATTCGCAGAACGA
GGTGCGCCTGCGCATCAAGCTGGCCCAGGGCGGCGACGCGCGCACCCTGGCGCAGGGCCTGGACGGGGTCGAGATCGCCG
AGGTGCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(118-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

66.757

97.606

0.652
  pilU Acinetobacter baylyi ADP1

63.585

94.947

0.604
  pilU Vibrio cholerae strain A1552

52.809

94.681

0.5
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42

93.085

0.391
  pilT Pseudomonas aeruginosa PAK

40.708

90.16

0.367
  pilT Acinetobacter nosocomialis M2

40.116

91.489

0.367
  pilT Acinetobacter baumannii D1279779

40.116

91.489

0.367
  pilT Acinetobacter baumannii strain A118

40.116

91.489

0.367