Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   U2S93_RS02485 Genome accession   NZ_CP140431
Coordinates   539516..540241 (-) Length   241 a.a.
NCBI ID   WP_003129066.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2023CK-01249     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 534516..545241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S93_RS02460 (U2S93_02460) - 534988..535503 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  U2S93_RS02465 (U2S93_02465) rarD 536193..537089 (-) 897 WP_003103301.1 EamA family transporter RarD -
  U2S93_RS02470 (U2S93_02470) - 537292..538266 (-) 975 WP_003129062.1 serine/threonine protein kinase -
  U2S93_RS02475 (U2S93_02475) - 538328..539086 (-) 759 WP_003103305.1 TOBE domain-containing protein -
  U2S93_RS02480 (U2S93_02480) - 539154..539474 (-) 321 WP_015502244.1 YfiM family lipoprotein -
  U2S93_RS02485 (U2S93_02485) comF 539516..540241 (-) 726 WP_003129066.1 ComF family protein Machinery gene
  U2S93_RS02490 (U2S93_02490) - 540380..540673 (-) 294 WP_003084806.1 hypothetical protein -
  U2S93_RS02495 (U2S93_02495) - 540727..541653 (-) 927 WP_003129068.1 LysR family transcriptional regulator -
  U2S93_RS02500 (U2S93_02500) - 541771..542529 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  U2S93_RS02505 (U2S93_02505) - 542606..542854 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  U2S93_RS02510 (U2S93_02510) - 542865..544241 (+) 1377 WP_022580694.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  U2S93_RS02515 (U2S93_02515) - 544243..545121 (+) 879 WP_015502245.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27035.55 Da        Isoelectric Point: 10.8040

>NTDB_id=834713 U2S93_RS02485 WP_003129066.1 539516..540241(-) (comF) [Pseudomonas aeruginosa strain 2023CK-01249]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=834713 U2S93_RS02485 WP_003129066.1 539516..540241(-) (comF) [Pseudomonas aeruginosa strain 2023CK-01249]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382