Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | QLF99_RS04670 | Genome accession | NZ_CP125110 |
| Coordinates | 1023996..1025033 (+) | Length | 345 a.a. |
| NCBI ID | WP_104938226.1 | Uniprot ID | - |
| Organism | Stenotrophomonas acidaminiphila strain SPDF1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1018996..1030033
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLF99_RS04655 (QLF99_04655) | - | 1019845..1020846 (+) | 1002 | WP_282884247.1 | DUF4105 domain-containing protein | - |
| QLF99_RS04660 (QLF99_04660) | - | 1020843..1022801 (+) | 1959 | WP_282884248.1 | alpha/beta fold hydrolase | - |
| QLF99_RS04665 (QLF99_04665) | proC | 1022890..1023729 (-) | 840 | WP_054663712.1 | pyrroline-5-carboxylate reductase | - |
| QLF99_RS04670 (QLF99_04670) | pilT | 1023996..1025033 (+) | 1038 | WP_104938226.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| QLF99_RS04675 (QLF99_04675) | pilU | 1025166..1026296 (+) | 1131 | WP_054663718.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| QLF99_RS04680 (QLF99_04680) | - | 1026975..1027523 (+) | 549 | WP_282884665.1 | DUF3617 family protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38581.23 Da Isoelectric Point: 6.7271
>NTDB_id=829999 QLF99_RS04670 WP_104938226.1 1023996..1025033(+) (pilT) [Stenotrophomonas acidaminiphila strain SPDF1]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLACPPVFRQLIEQPQGLILVTGPTGSGKSTTLAAMVDHINKNEYGHILTVED
PIEFVHTPQKCLINQREVHRDTHGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRIASHEIMVATPAIRNLIREDKVAQMYSAIQTGQQAGMQTLDQNL
QDLVKRSLITRNQAREYAKDRRLFE
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLACPPVFRQLIEQPQGLILVTGPTGSGKSTTLAAMVDHINKNEYGHILTVED
PIEFVHTPQKCLINQREVHRDTHGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRIASHEIMVATPAIRNLIREDKVAQMYSAIQTGQQAGMQTLDQNL
QDLVKRSLITRNQAREYAKDRRLFE
Nucleotide
Download Length: 1038 bp
>NTDB_id=829999 QLF99_RS04670 WP_104938226.1 1023996..1025033(+) (pilT) [Stenotrophomonas acidaminiphila strain SPDF1]
ATGGACATCGCTGAACTTCTGGCGTTCTCGGTCAAGAACAAGGCCTCGGACCTGCACCTGTCCGCCGGCCTGCCGCCGAT
GATCCGCGTCGACGGCGACGTGCGCCGCATCAACATCCCTGCACTGGACCACAAGCAGGTCCACGCCCTGGTGTACGACA
TCATGTCGGACAAGCAGCGCCGCGATTACGAGGAATTCCTCGAGGTCGACTTCTCCTTCGAGATTCCCTCGCTGGCGCGC
TTCCGTGTCAACGCGTTCAACCAGAACCGCGGTGCCGGTGCGGTGTTCCGCACCATTCCCTCCGAAGTCCTGACCCTGGA
GGACCTGGCGTGCCCGCCGGTGTTCCGCCAGCTGATCGAGCAGCCGCAGGGACTGATCCTGGTCACCGGCCCGACCGGTT
CGGGCAAGTCGACCACGCTGGCGGCGATGGTGGACCACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAT
CCGATCGAATTCGTGCACACCCCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGACACCCACGGCTTCAACGA
GGCGCTGCGCTCGGCGCTGCGCGAGGACCCGGACTACATCCTGGTGGGCGAACTGCGTGACCTGGAAACCATCCGCCTGG
CGCTGACCGCCGCGGAGACCGGCCACCTGGTGTTCGGCACCCTGCATACCAGTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAGAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGCTGCGCGCGGTGATCTCGCAGGC
GCTGCTGAAGAAGGTCGGCGGTGGCCGCATCGCCTCGCACGAGATCATGGTGGCCACGCCGGCGATCCGGAACCTGATCC
GCGAGGACAAGGTCGCGCAGATGTATTCGGCCATCCAGACCGGCCAGCAGGCGGGCATGCAGACCCTCGACCAGAACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACCCGCAACCAGGCCCGCGAGTACGCCAAGGACCGGCGCCTGTTCGAATAA
ATGGACATCGCTGAACTTCTGGCGTTCTCGGTCAAGAACAAGGCCTCGGACCTGCACCTGTCCGCCGGCCTGCCGCCGAT
GATCCGCGTCGACGGCGACGTGCGCCGCATCAACATCCCTGCACTGGACCACAAGCAGGTCCACGCCCTGGTGTACGACA
TCATGTCGGACAAGCAGCGCCGCGATTACGAGGAATTCCTCGAGGTCGACTTCTCCTTCGAGATTCCCTCGCTGGCGCGC
TTCCGTGTCAACGCGTTCAACCAGAACCGCGGTGCCGGTGCGGTGTTCCGCACCATTCCCTCCGAAGTCCTGACCCTGGA
GGACCTGGCGTGCCCGCCGGTGTTCCGCCAGCTGATCGAGCAGCCGCAGGGACTGATCCTGGTCACCGGCCCGACCGGTT
CGGGCAAGTCGACCACGCTGGCGGCGATGGTGGACCACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAT
CCGATCGAATTCGTGCACACCCCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGACACCCACGGCTTCAACGA
GGCGCTGCGCTCGGCGCTGCGCGAGGACCCGGACTACATCCTGGTGGGCGAACTGCGTGACCTGGAAACCATCCGCCTGG
CGCTGACCGCCGCGGAGACCGGCCACCTGGTGTTCGGCACCCTGCATACCAGTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAGAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGCTGCGCGCGGTGATCTCGCAGGC
GCTGCTGAAGAAGGTCGGCGGTGGCCGCATCGCCTCGCACGAGATCATGGTGGCCACGCCGGCGATCCGGAACCTGATCC
GCGAGGACAAGGTCGCGCAGATGTATTCGGCCATCCAGACCGGCCAGCAGGCGGGCATGCAGACCCTCGACCAGAACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACCCGCAACCAGGCCCGCGAGTACGCCAAGGACCGGCGCCTGTTCGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter nosocomialis M2 |
78.488 |
99.71 |
0.783 |
| pilT | Acinetobacter baumannii D1279779 |
78.488 |
99.71 |
0.783 |
| pilT | Acinetobacter baumannii strain A118 |
78.488 |
99.71 |
0.783 |
| pilT | Pseudomonas stutzeri DSM 10701 |
78.761 |
98.261 |
0.774 |
| pilT | Acinetobacter baylyi ADP1 |
77.326 |
99.71 |
0.771 |
| pilT | Pseudomonas aeruginosa PAK |
78.171 |
98.261 |
0.768 |
| pilT | Legionella pneumophila strain Lp02 |
72.965 |
99.71 |
0.728 |
| pilT | Legionella pneumophila strain ERS1305867 |
72.965 |
99.71 |
0.728 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
72.036 |
95.362 |
0.687 |
| pilT | Vibrio cholerae strain A1552 |
72.036 |
95.362 |
0.687 |
| pilT | Neisseria meningitidis 8013 |
66.276 |
98.841 |
0.655 |
| pilT | Neisseria gonorrhoeae MS11 |
65.982 |
98.841 |
0.652 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.565 |
100 |
0.496 |
| pilU | Vibrio cholerae strain A1552 |
40.517 |
100 |
0.409 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.708 |
98.261 |
0.4 |
| pilU | Acinetobacter baylyi ADP1 |
39.706 |
98.551 |
0.391 |