Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   K9V56_RS04770 Genome accession   NZ_CP124551
Coordinates   1090284..1091327 (+) Length   347 a.a.
NCBI ID   WP_102766115.1    Uniprot ID   -
Organism   Kinneretia aquatilis strain DH15     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1085284..1096327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9V56_RS04750 (K9V56_004750) - 1085997..1087283 (-) 1287 WP_171827715.1 c-type cytochrome -
  K9V56_RS04755 (K9V56_004755) - 1087284..1088021 (-) 738 WP_223696759.1 c-type cytochrome -
  K9V56_RS04760 (K9V56_004760) - 1088096..1089517 (-) 1422 WP_223696758.1 PLP-dependent aminotransferase family protein -
  K9V56_RS04765 (K9V56_004765) - 1089514..1090257 (-) 744 WP_171827714.1 YggS family pyridoxal phosphate-dependent enzyme -
  K9V56_RS04770 (K9V56_004770) pilT 1090284..1091327 (+) 1044 WP_102766115.1 type IV pilus twitching motility protein PilT Machinery gene
  K9V56_RS04775 (K9V56_004775) pilU 1091472..1092608 (+) 1137 WP_102766116.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  K9V56_RS04780 (K9V56_004780) - 1092658..1093599 (+) 942 WP_171827713.1 NAD(P)-dependent oxidoreductase -
  K9V56_RS04785 (K9V56_004785) - 1093653..1094297 (-) 645 WP_223696757.1 BON domain-containing protein -
  K9V56_RS04790 (K9V56_004790) - 1094378..1094950 (-) 573 WP_102766119.1 SIS domain-containing protein -
  K9V56_RS04795 (K9V56_004795) - 1095060..1095503 (-) 444 WP_102766577.1 YraN family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38147.75 Da        Isoelectric Point: 7.0817

>NTDB_id=826427 K9V56_RS04770 WP_102766115.1 1090284..1091327(+) (pilT) [Kinneretia aquatilis strain DH15]
MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINVEALEHRQVHDMVYDIMNDSQRKIYEESLEVDFSFEIQGLAR
FRVNAFNQNRGAGAVFRTIPSKILSLEQLNAPKIFAELALRPRGLVLVTGPTGSGKSTTLAGMVNHLNENEYGHILTIED
PIEFVHESKKSLINQREVGPHTMSFANALKSALREDPDAVLVGEMRDLETIRLALTAAETGHLVFGTLHTSSAAKTVDRI
VDVFPAAEKEMVRAMVSESLVAVISQSLCKLKDGSGRVAAHEIMLGTSAIRNLIRENKVAQMYSAIQTGNSVGMQTLDQN
LTDLVRRNIISAAEARAKAKFPENFPG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=826427 K9V56_RS04770 WP_102766115.1 1090284..1091327(+) (pilT) [Kinneretia aquatilis strain DH15]
ATGGACATCACCCAACTGCTCGCATTTTCGGTCAAGAACAAGGCCTCCGACTTGCACCTCTCGGCCGGCTTGCCACCGAT
GATTCGCGTGCATGGGGATGTGCGTCGCATCAATGTCGAAGCCCTGGAACACCGCCAGGTGCACGACATGGTCTACGACA
TCATGAACGACTCGCAGCGCAAGATCTACGAAGAGTCGCTGGAAGTGGACTTCTCGTTTGAGATCCAGGGCCTGGCGCGC
TTCCGGGTCAATGCCTTCAACCAGAACCGCGGTGCCGGCGCCGTGTTCCGGACCATCCCGAGCAAGATCCTCTCGCTGGA
GCAGCTCAACGCCCCCAAGATCTTTGCCGAGCTGGCCCTGCGCCCGCGCGGCCTGGTGCTGGTGACCGGTCCCACGGGCT
CGGGCAAGTCCACCACCTTGGCCGGCATGGTCAACCACCTCAACGAGAACGAGTACGGCCACATCCTGACCATCGAGGAC
CCGATCGAGTTCGTGCATGAGTCCAAGAAAAGCCTGATCAACCAGCGTGAGGTCGGCCCGCACACCATGAGCTTTGCCAA
CGCGCTGAAGTCGGCGCTGCGCGAAGACCCGGACGCCGTGCTGGTCGGTGAAATGCGGGACCTGGAAACCATCCGCCTGG
CCCTGACCGCGGCGGAAACCGGCCACTTGGTCTTCGGCACCTTGCACACCTCGTCCGCCGCCAAGACCGTGGACCGGATC
GTCGATGTCTTCCCAGCTGCTGAAAAAGAAATGGTGCGGGCCATGGTGTCCGAATCCCTGGTGGCCGTGATCTCGCAAAG
CCTGTGCAAGCTGAAGGACGGCTCGGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACCTCGGCCATTCGCAATCTGA
TCCGCGAGAACAAAGTCGCGCAGATGTACTCGGCCATCCAGACCGGCAACAGCGTGGGCATGCAGACCCTGGATCAGAAC
CTCACCGACCTGGTGCGCCGCAACATCATCTCAGCCGCCGAAGCCCGCGCCAAAGCCAAATTTCCGGAAAACTTCCCAGG
ATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

74.783

99.424

0.744
  pilT Acinetobacter nosocomialis M2

74.493

99.424

0.741
  pilT Acinetobacter baumannii D1279779

74.493

99.424

0.741
  pilT Acinetobacter baumannii strain A118

74.493

99.424

0.741
  pilT Pseudomonas stutzeri DSM 10701

73.623

99.424

0.732
  pilT Acinetobacter baylyi ADP1

72.464

99.424

0.72
  pilT Legionella pneumophila strain Lp02

70.796

97.695

0.692
  pilT Legionella pneumophila strain ERS1305867

70.796

97.695

0.692
  pilT Neisseria gonorrhoeae MS11

68.986

99.424

0.686
  pilT Neisseria meningitidis 8013

68.986

99.424

0.686
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

67.16

97.406

0.654
  pilT Vibrio cholerae strain A1552

67.16

97.406

0.654
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.725

99.424

0.504
  pilU Acinetobacter baylyi ADP1

40.751

99.712

0.406
  pilU Vibrio cholerae strain A1552

41.194

96.542

0.398
  pilU Pseudomonas stutzeri DSM 10701

40.299

96.542

0.389