Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QDU35_RS02320 Genome accession   NZ_CP122987
Coordinates   474513..475547 (-) Length   344 a.a.
NCBI ID   WP_280101106.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain JNG     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469513..480547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDU35_RS02300 (QDU35_02300) - 470312..471022 (-) 711 WP_017412061.1 methyltransferase -
  QDU35_RS02305 (QDU35_02305) srmB 471151..472374 (+) 1224 WP_005320462.1 ATP-dependent RNA helicase SrmB -
  QDU35_RS02310 (QDU35_02310) yaaA 472563..473336 (-) 774 WP_005320464.1 peroxide stress protein YaaA -
  QDU35_RS02315 (QDU35_02315) pilU 473368..474477 (-) 1110 WP_005320465.1 type IVa pilus ATPase TapU Machinery gene
  QDU35_RS02320 (QDU35_02320) pilT 474513..475547 (-) 1035 WP_280101106.1 type IVa pilus ATPase TapT Machinery gene
  QDU35_RS02325 (QDU35_02325) - 475587..476288 (+) 702 WP_005320467.1 YggS family pyridoxal phosphate-dependent enzyme -
  QDU35_RS02330 (QDU35_02330) proC 476379..477203 (+) 825 WP_017412059.1 pyrroline-5-carboxylate reductase -
  QDU35_RS02335 (QDU35_02335) - 477232..477783 (+) 552 WP_005320477.1 YggT family protein -
  QDU35_RS02340 (QDU35_02340) yggU 477783..478082 (+) 300 WP_005320479.1 DUF167 family protein YggU -
  QDU35_RS02345 (QDU35_02345) - 478101..478520 (+) 420 WP_005320482.1 DUF4426 domain-containing protein -
  QDU35_RS02350 (QDU35_02350) - 478589..478888 (-) 300 WP_011899099.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38292.93 Da        Isoelectric Point: 6.6225

>NTDB_id=817707 QDU35_RS02320 WP_280101106.1 474513..475547(-) (pilT) [Aeromonas salmonicida strain JNG]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRNELEENFEVDFSFEVPNLAR
FRVNAFQQSRGSGAVFRTIPSTVLSLEDLDAPEIFRKISEYPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIED
PIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSL
KQLVSRGVVASLDAKAKAVDPNSV

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=817707 QDU35_RS02320 WP_280101106.1 474513..475547(-) (pilT) [Aeromonas salmonicida strain JNG]
ATGGATATCACAGAGTTATTGGCTTTCAGTGTAAAGCATAAAGCCTCGGATCTACACCTCTCGGCCGGGGTTCCCCCGAT
GATCAGGGTTGATGGTGAGGTTCGCAAGATCAATTTACCCGCCCTGGAACACAGGGAAGTGCATGCCCTCATTTACGACA
TCATGAACGACCACCAGCGCAATGAACTGGAAGAGAACTTCGAGGTCGACTTCTCGTTCGAAGTCCCCAATCTGGCCCGC
TTCCGGGTCAATGCCTTCCAGCAATCCCGCGGTTCGGGGGCCGTATTCCGTACCATCCCCAGCACGGTGCTGAGCCTGGA
GGATCTCGATGCCCCCGAAATCTTCCGCAAGATCTCCGAATACCCGCGCGGCCTGGTACTGGTGACAGGACCGACCGGCT
CGGGCAAGTCCACCACACTGGCGGCCATGGTCAACTACATCAACGAGAACTTCCATCACCACATACTCACCATCGAAGAC
CCCATCGAATTCGTGCACGAGAACAAACGCTGTCTGGTGAACCAGCGGGAAGTTCACAGGGACACCAAGAGCTTCAGCAA
CGCCCTGCGCTCGGCACTGCGGGAAGACCCGGACATCATACTGGTGGGCGAGATGCGTGACCTCGAGACCATTCGTCTGG
CAATGACGGCGGCCGAGACCGGCCATCTGGTATTCGGCACCCTGCACACCTCGTCGGCAGCCAAGACCATAGACCGGATC
ATCGACGTCTTCCCCGGTGCGGAAAAAGACATGGTGCGATCCATGCTCTCCGAATCCCTGCGGGCGGTTATCTCCCAGAC
CCTGCTCAAACGGATAGGCGGCGGCCGGGTGGCGGCCCACGAGATCATGATGGGCATACCCGCTGTGCGCAACCTCATAC
GGGAAGACAAAATCGCCCAGCTCTACTCCGTGATCCAGACCGGGATGACCCATGGCATGCAGACCATGGATCAGAGCCTC
AAGCAGCTGGTCAGCCGTGGTGTGGTCGCCTCACTCGATGCCAAGGCCAAGGCGGTCGACCCCAATAGCGTGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

77.843

99.709

0.776
  pilT Acinetobacter baylyi ADP1

77.843

99.709

0.776
  pilT Acinetobacter baumannii D1279779

77.551

99.709

0.773
  pilT Acinetobacter baumannii strain A118

77.551

99.709

0.773
  pilT Pseudomonas stutzeri DSM 10701

76.093

99.709

0.759
  pilT Pseudomonas aeruginosa PAK

75.51

99.709

0.753
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

75.668

97.965

0.741
  pilT Vibrio cholerae strain A1552

75.668

97.965

0.741
  pilT Legionella pneumophila strain Lp02

72.353

98.837

0.715
  pilT Legionella pneumophila strain ERS1305867

72.353

98.837

0.715
  pilT Neisseria meningitidis 8013

69.275

100

0.695
  pilT Neisseria gonorrhoeae MS11

68.986

100

0.692
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.312

99.709

0.512
  pilU Vibrio cholerae strain A1552

42.609

100

0.427
  pilU Pseudomonas stutzeri DSM 10701

40.29

100

0.404
  pilU Acinetobacter baylyi ADP1

40.173

100

0.404